Analysis of interatomic Contacts of Structural Units in PDB entry:
5KHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KHJ entry

There are 2 chains in PDB entry 5KHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 443SER 641
B
 ASP 443LEU 643
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5KHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
443 463Right-handed alpha
Helix 2
AA2
A
466 482Right-handed alpha
Helix 3
AA3
A
487 494Right-handed alpha
Helix 4
AA4
A
496 508Right-handed alpha
Helix 5
AA5
A
508 515Right-handed alpha
Helix 6
AA6
A
515 520Right-handed alpha
Helix 7
AA7
A
522 531Right-handed alpha
Helix 8
AA8
A
581 588Right-handed alpha
Helix 9
AA9
A
608 618Right-handed alpha
Helix 10
AB1
A
621 636Right-handed alpha
Helix 11
AB2
B
444 463Right-handed alpha
Helix 12
AB3
B
466 482Right-handed alpha
Helix 13
AB4
B
487 494Right-handed alpha
Helix 14
AB5
B
496 508Right-handed alpha
Helix 15
AB6
B
508 515Right-handed alpha
Helix 16
AB7
B
515 520Right-handed alpha
Helix 17
AB8
B
522 531Right-handed alpha
Helix 18
AB9
B
581 588Right-handed alpha
Helix 19
AC1
B
608 618Right-handed alpha
Helix 20
AC2
B
621 636Right-handed alpha
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There are 4 sheets in PDB entry 5KHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 538first strand
Strand 2
A
601 607anti-parallel
Strand 3
A
553 559anti-parallel
Strand 4
A
579 580anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 545first strand
Strand 2
A
594 597anti-parallel
Strand 3
A
562 565anti-parallel
Strand 4
A
572 574anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
534 538first strand
Strand 2
B
601 607anti-parallel
Strand 3
B
553 559anti-parallel
Strand 4
B
579 580anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 545first strand
Strand 2
B
594 597anti-parallel
Strand 3
B
562 565anti-parallel
Strand 4
B
572 574anti-parallel
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