Analysis of interatomic Contacts of Structural Units in PDB entry:
5KHL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KHL entry

There is 1 chain in PDB entry 5KHL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 21PRO 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5KHL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
29 39Right-handed alpha
Helix 2
AA2
B
41 43Right-handed 310
Helix 3
AA3
B
55 59Right-handed 310
Helix 4
AA4
B
65 69Right-handed 310
Helix 5
AA5
B
70 76Right-handed alpha
Helix 6
AA6
B
90 100Right-handed alpha
Helix 7
AA7
B
112 127Right-handed alpha
Helix 8
AA8
B
130 150Right-handed alpha
Helix 9
AA9
B
176 185Right-handed alpha
Helix 10
AB1
B
202 210Right-handed alpha
Helix 11
AB2
B
226 234Right-handed alpha
Helix 12
AB3
B
235 239Right-handed 310
Helix 13
AB4
B
240 245Right-handed alpha
Helix 14
AB5
B
252 256Right-handed 310
Helix 15
AB6
B
261 276Right-handed alpha
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There are 2 sheets in PDB entry 5KHL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
25 27parallel
Strand 3
B
81 84parallel
Strand 4
B
103 106parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
170 172anti-parallel
Strand 3
B
158 162anti-parallel
Strand 4
B
213 216parallel
Strand 5
B
248 250parallel
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