Analysis of interatomic Contacts of Structural Units in PDB entry:
5KHN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KHN entry

There are 2 chains in PDB entry 5KHN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1MET 860
A
 MET 1MET 860
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 5KHN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1 14Right-handed alpha
Helix 2
AA2
B
16 38Right-handed alpha
Helix 3
AA3
B
44 48Right-handed 310
Helix 4
AA4
B
52 66Right-handed alpha
Helix 5
AA5
B
67 70Right-handed 310
Helix 6
AA6
B
81 102Right-handed alpha
Helix 7
AA7
B
114 120Right-handed alpha
Helix 8
AA8
B
121 125Right-handed 310
Helix 9
AA9
B
126 140Right-handed alpha
Helix 10
AB1
B
140 150Right-handed alpha
Helix 11
AB2
B
152 166Right-handed alpha
Helix 12
AB3
B
175 177Right-handed 310
Helix 13
AB4
B
178 195Right-handed alpha
Helix 14
AB5
B
202 207Right-handed alpha
Helix 15
AB6
B
235 247Right-handed alpha
Helix 16
AB7
B
248 254Right-handed alpha
Helix 17
AB8
B
262 274Right-handed alpha
Helix 18
AB9
B
276 296Right-handed alpha
Helix 19
AC1
B
298 325Right-handed alpha
Helix 20
AC2
B
331 333Right-handed 310
Helix 21
AC3
B
334 359Right-handed alpha
Helix 22
AC4
B
362 373Right-handed alpha
Helix 23
AC5
B
374 391Right-handed alpha
Helix 24
AC6
B
397 430Right-handed alpha
Helix 25
AC7
B
442 453Right-handed alpha
Helix 26
AC8
B
453 468Right-handed alpha
Helix 27
AC9
B
469 475Right-handed 310
Helix 28
AD1
B
489 498Right-handed alpha
Helix 29
AD2
B
515 527Right-handed alpha
Helix 30
AD3
B
538 542Right-handed 310
Helix 31
AD4
B
547 565Right-handed alpha
Helix 32
AD5
B
573 595Right-handed alpha
Helix 33
AD6
B
597 614Right-handed alpha
Helix 34
AD7
B
618 643Right-handed alpha
Helix 35
AD8
B
654 660Right-handed alpha
Helix 36
AD9
B
684 699Right-handed alpha
Helix 37
AE1
B
705 738Right-handed alpha
Helix 38
AE2
B
741 767Right-handed alpha
Helix 39
AE3
B
773 775Right-handed 310
Helix 40
AE4
B
776 796Right-handed alpha
Helix 41
AE5
B
802 810Right-handed alpha
Helix 42
AE6
B
811 828Right-handed alpha
Helix 43
AE7
B
831 855Right-handed alpha
Helix 44
AE8
B
856 859Right-handed 310
Helix 45
AE9
A
2 16Right-handed alpha
Helix 46
AF1
A
16 39Right-handed alpha
Helix 47
AF2
A
44 48Right-handed 310
Helix 48
AF3
A
52 66Right-handed alpha
Helix 49
AF4
A
81 102Right-handed alpha
Helix 50
AF5
A
114 121Right-handed alpha
Helix 51
AF6
A
122 124Right-handed 310
Helix 52
AF7
A
126 140Right-handed alpha
Helix 53
AF8
A
140 150Right-handed alpha
Helix 54
AF9
A
152 164Right-handed alpha
Helix 55
AG1
A
166 171Right-handed alpha
Helix 56
AG2
A
174 195Right-handed alpha
Helix 57
AG3
A
235 248Right-handed alpha
Helix 58
AG4
A
248 253Right-handed alpha
Helix 59
AG5
A
262 275Right-handed alpha
Helix 60
AG6
A
276 296Right-handed alpha
Helix 61
AG7
A
298 325Right-handed alpha
Helix 62
AG8
A
329 332Right-handed 310
Helix 63
AG9
A
333 360Right-handed alpha
Helix 64
AH1
A
362 374Right-handed alpha
Helix 65
AH2
A
375 391Right-handed alpha
Helix 66
AH3
A
397 429Right-handed alpha
Helix 67
AH4
A
443 468Right-handed alpha
Helix 68
AH5
A
469 475Right-handed 310
Helix 69
AH6
A
480 485Right-handed 310
Helix 70
AH7
A
489 498Right-handed alpha
Helix 71
AH8
A
515 528Right-handed alpha
Helix 72
AH9
A
538 542Right-handed 310
Helix 73
AI1
A
545 565Right-handed alpha
Helix 74
AI2
A
573 595Right-handed alpha
Helix 75
AI3
A
597 615Right-handed alpha
Helix 76
AI4
A
618 627Right-handed alpha
Helix 77
AI5
A
629 643Right-handed alpha
Helix 78
AI6
A
649 653Right-handed 310
Helix 79
AI7
A
654 660Right-handed alpha
Helix 80
AI8
A
686 699Right-handed alpha
Helix 81
AI9
A
705 739Right-handed alpha
Helix 82
AJ1
A
741 767Right-handed alpha
Helix 83
AJ2
A
773 775Right-handed 310
Helix 84
AJ3
A
776 796Right-handed alpha
Helix 85
AJ4
A
802 810Right-handed alpha
Helix 86
AJ5
A
812 828Right-handed alpha
Helix 87
AJ6
A
831 855Right-handed alpha
Helix 88
AJ7
A
855 860Right-handed alpha
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There are 5 sheets in PDB entry 5KHN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
73 79anti-parallel
Strand 4
B
256 261anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
534 536first strand
Strand 2
B
668 673anti-parallel
Strand 3
B
509 513anti-parallel
Strand 4
B
703 704anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
256 261anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 513first strand
Strand 2
A
667 674anti-parallel
Strand 3
A
533 536anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 513first strand
Strand 2
A
667 674anti-parallel
Strand 3
A
662 663anti-parallel
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