Analysis of interatomic Contacts of Structural Units in PDB entry:
5KHS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KHS entry

There are 2 chains in PDB entry 5KHS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1MET 860
A
 VAL 2MET 860
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 91 helices in PDB entry 5KHS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1 14Right-handed alpha
Helix 2
AA2
B
16 38Right-handed alpha
Helix 3
AA3
B
44 49Right-handed 310
Helix 4
AA4
B
54 66Right-handed alpha
Helix 5
AA5
B
81 101Right-handed alpha
Helix 6
AA6
B
114 121Right-handed alpha
Helix 7
AA7
B
122 125Right-handed 310
Helix 8
AA8
B
126 140Right-handed alpha
Helix 9
AA9
B
140 149Right-handed alpha
Helix 10
AB1
B
152 170Right-handed alpha
Helix 11
AB2
B
179 195Right-handed alpha
Helix 12
AB3
B
201 207Right-handed alpha
Helix 13
AB4
B
235 248Right-handed alpha
Helix 14
AB5
B
248 254Right-handed alpha
Helix 15
AB6
B
262 274Right-handed alpha
Helix 16
AB7
B
276 296Right-handed alpha
Helix 17
AB8
B
298 324Right-handed alpha
Helix 18
AB9
B
330 332Right-handed 310
Helix 19
AC1
B
333 359Right-handed alpha
Helix 20
AC2
B
362 374Right-handed alpha
Helix 21
AC3
B
374 390Right-handed alpha
Helix 22
AC4
B
391 393Right-handed 310
Helix 23
AC5
B
397 429Right-handed alpha
Helix 24
AC6
B
443 453Right-handed alpha
Helix 25
AC7
B
453 468Right-handed alpha
Helix 26
AC8
B
469 475Right-handed 310
Helix 27
AC9
B
480 485Right-handed alpha
Helix 28
AD1
B
489 496Right-handed alpha
Helix 29
AD2
B
515 527Right-handed alpha
Helix 30
AD3
B
537 542Right-handed alpha
Helix 31
AD4
B
547 565Right-handed alpha
Helix 32
AD5
B
574 594Right-handed alpha
Helix 33
AD6
B
599 614Right-handed alpha
Helix 34
AD7
B
617 643Right-handed alpha
Helix 35
AD8
B
649 653Right-handed 310
Helix 36
AD9
B
654 660Right-handed alpha
Helix 37
AE1
B
684 699Right-handed alpha
Helix 38
AE2
B
705 739Right-handed alpha
Helix 39
AE3
B
741 766Right-handed alpha
Helix 40
AE4
B
772 775Right-handed 310
Helix 41
AE5
B
776 796Right-handed alpha
Helix 42
AE6
B
802 810Right-handed alpha
Helix 43
AE7
B
811 828Right-handed alpha
Helix 44
AE8
B
831 836Right-handed alpha
Helix 45
AE9
B
836 855Right-handed alpha
Helix 46
AF1
B
855 860Right-handed alpha
Helix 47
AF2
A
3 16Right-handed alpha
Helix 48
AF3
A
16 38Right-handed alpha
Helix 49
AF4
A
52 66Right-handed alpha
Helix 50
AF5
A
68 72Right-handed 310
Helix 51
AF6
A
81 101Right-handed alpha
Helix 52
AF7
A
114 121Right-handed alpha
Helix 53
AF8
A
126 140Right-handed alpha
Helix 54
AF9
A
140 148Right-handed alpha
Helix 55
AG1
A
152 171Right-handed alpha
Helix 56
AG2
A
174 195Right-handed alpha
Helix 57
AG3
A
234 248Right-handed alpha
Helix 58
AG4
A
248 254Right-handed alpha
Helix 59
AG5
A
262 275Right-handed alpha
Helix 60
AG6
A
276 296Right-handed alpha
Helix 61
AG7
A
298 325Right-handed alpha
Helix 62
AG8
A
329 332Right-handed 310
Helix 63
AG9
A
333 360Right-handed alpha
Helix 64
AH1
A
362 374Right-handed alpha
Helix 65
AH2
A
375 390Right-handed alpha
Helix 66
AH3
A
391 393Right-handed 310
Helix 67
AH4
A
397 420Right-handed alpha
Helix 68
AH5
A
420 429Right-handed alpha
Helix 69
AH6
A
443 454Right-handed alpha
Helix 70
AH7
A
455 468Right-handed alpha
Helix 71
AH8
A
469 475Right-handed 310
Helix 72
AH9
A
480 485Right-handed 310
Helix 73
AI1
A
489 498Right-handed alpha
Helix 74
AI2
A
499 501Right-handed 310
Helix 75
AI3
A
515 528Right-handed alpha
Helix 76
AI4
A
538 542Right-handed 310
Helix 77
AI5
A
545 565Right-handed alpha
Helix 78
AI6
A
573 595Right-handed alpha
Helix 79
AI7
A
599 615Right-handed alpha
Helix 80
AI8
A
618 629Right-handed alpha
Helix 81
AI9
A
629 643Right-handed alpha
Helix 82
AJ1
A
649 653Right-handed 310
Helix 83
AJ2
A
654 660Right-handed alpha
Helix 84
AJ3
A
684 699Right-handed alpha
Helix 85
AJ4
A
705 739Right-handed alpha
Helix 86
AJ5
A
741 746Right-handed alpha
Helix 87
AJ6
A
749 766Right-handed alpha
Helix 88
AJ7
A
776 798Right-handed alpha
Helix 89
AJ8
A
802 810Right-handed alpha
Helix 90
AJ9
A
812 828Right-handed alpha
Helix 91
AK1
A
831 855Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5KHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 109first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
73 79anti-parallel
Strand 4
B
256 260anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
534 536first strand
Strand 2
B
669 673anti-parallel
Strand 3
B
509 512anti-parallel
Strand 4
B
702 703anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
75 78anti-parallel
Strand 4
A
256 257anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 536first strand
Strand 2
A
668 673anti-parallel
Strand 3
A
509 513anti-parallel
Strand 4
A
702 703anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il