Analysis of interatomic Contacts of Structural Units in PDB entry:
5KHX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KHX entry

There are 2 chains in PDB entry 5KHX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 867GLU 1033
A
 THR 1036LYS 1154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5KHX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
871 873Right-handed 310
Helix 2
AA2
A
918 931Right-handed alpha
Helix 3
AA3
A
963 971Right-handed alpha
Helix 4
AA4
A
976 997Right-handed alpha
Helix 5
AA5
A
1005 1007Right-handed 310
Helix 6
AA6
A
1044 1048Right-handed 310
Helix 7
AA7
A
1049 1056Right-handed alpha
Helix 8
AA8
A
1060 1076Right-handed alpha
Helix 9
AA9
A
1079 1082Right-handed 310
Helix 10
AB1
A
1083 1093Right-handed alpha
Helix 11
AB2
A
1099 1110Right-handed alpha
Helix 12
AB3
A
1121 1130Right-handed alpha
Helix 13
AB4
A
1135 1139Right-handed 310
Helix 14
AB5
A
1141 1151Right-handed alpha
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There are 4 sheets in PDB entry 5KHX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 880first strand
Strand 2
A
889 894anti-parallel
Strand 3
A
903 908anti-parallel
Strand 4
A
951 957anti-parallel
Strand 5
A
940 946anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1000first strand
Strand 2
A
1026 1027anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1009 1013first strand
Strand 2
A
1016 1019anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1034 1036first strand
Strand 2
A
1057 1059anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il