Analysis of interatomic Contacts of Structural Units in PDB entry:
5KIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KIA entry

There is 1 chain in PDB entry 5KIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ALA 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5KIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 46Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
96 101Right-handed alpha
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
140 145Right-handed alpha
Helix 6
AA6
A
146 158Right-handed alpha
Helix 7
AA7
A
173 186Right-handed alpha
Helix 8
AA8
A
197 207Right-handed alpha
Helix 9
AA9
A
219 227Right-handed alpha
Helix 10
AB1
A
242 252Right-handed alpha
Helix 11
AB2
A
272 279Right-handed alpha
Helix 12
AB3
A
291 304Right-handed alpha
Helix 13
AB4
A
308 310Right-handed 310
Helix 14
AB5
A
320 331Right-handed alpha
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There are 5 sheets in PDB entry 5KIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 5first strand
Strand 2
A
14 18anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
27 36anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
84 87anti-parallel
Strand 5
A
132 134anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
27 36anti-parallel
Strand 3
A
335 339anti-parallel
Strand 4
A
312 317parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
111 112anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
191 195parallel
Strand 3
A
167 170parallel
Strand 4
A
233 238parallel
Strand 5
A
253 261parallel
Strand 6
A
282 285parallel
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