Analysis of interatomic Contacts of Structural Units in PDB entry:
5KIN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KIN entry

There are 6 chains in PDB entry 5KIN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	LYS 258
B	GLN 4	HIS 90
B	ILE 92	LYS 402
C	MET 1	LYS 258
D	GLN 4	HIS 90
D	ILE 92	LYS 402

There are 66 helices in PDB entry 5KIN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	31	34	Right-handed 310
Helix 3	AA3	A	35	45	Right-handed alpha
Helix 4	AA4	A	64	77	Right-handed alpha
Helix 5	AA5	A	80	89	Right-handed alpha
Helix 6	AA6	A	102	110	Right-handed alpha
Helix 7	AA7	A	110	117	Right-handed alpha
Helix 8	AA8	A	132	144	Right-handed 310
Helix 9	AA9	A	159	168	Right-handed alpha
Helix 10	AB1	A	191	203	Right-handed alpha
Helix 11	AB2	A	216	225	Right-handed alpha
Helix 12	AB3	A	233	243	Right-handed alpha
Helix 13	AB4	A	246	255	Right-handed alpha
Helix 14	AB5	B	21	41	Right-handed alpha
Helix 15	AB6	B	41	55	Right-handed alpha
Helix 16	AB7	B	65	73	Right-handed alpha
Helix 17	AB8	B	83	85	Right-handed 310
Helix 18	AB9	B	90	105	Right-handed alpha
Helix 19	AC1	B	117	130	Right-handed alpha
Helix 20	AC2	B	140	144	Right-handed alpha
Helix 21	AC3	B	146	156	Right-handed alpha
Helix 22	AC4	B	169	184	Right-handed alpha
Helix 23	AC5	B	200	210	Right-handed alpha
Helix 24	AC6	B	210	225	Right-handed alpha
Helix 25	AC7	B	239	247	Right-handed alpha
Helix 26	AC8	B	248	250	Right-handed 310
Helix 27	AC9	B	274	279	Right-handed alpha
Helix 28	AD1	B	306	310	Right-handed 310
Helix 29	AD2	B	315	324	Right-handed alpha
Helix 30	AD3	B	333	348	Right-handed alpha
Helix 31	AD4	B	353	371	Right-handed alpha
Helix 32	AD5	B	384	386	Right-handed 310
Helix 33	AD6	B	387	402	Right-handed alpha
Helix 34	AD7	C	3	15	Right-handed alpha
Helix 35	AD8	C	31	34	Right-handed 310
Helix 36	AD9	C	35	45	Right-handed alpha
Helix 37	AE1	C	64	77	Right-handed alpha
Helix 38	AE2	C	80	89	Right-handed alpha
Helix 39	AE3	C	102	110	Right-handed alpha
Helix 40	AE4	C	110	118	Right-handed alpha
Helix 41	AE5	C	132	144	Right-handed 310
Helix 42	AE6	C	159	168	Right-handed alpha
Helix 43	AE7	C	189	204	Right-handed alpha
Helix 44	AE8	C	216	225	Right-handed alpha
Helix 45	AE9	C	233	243	Right-handed alpha
Helix 46	AF1	C	246	255	Right-handed alpha
Helix 47	AF2	D	21	40	Right-handed alpha
Helix 48	AF3	D	41	55	Right-handed alpha
Helix 49	AF4	D	65	73	Right-handed alpha
Helix 50	AF5	D	82	85	Right-handed 310
Helix 51	AF6	D	90	105	Right-handed alpha
Helix 52	AF7	D	117	130	Right-handed alpha
Helix 53	AF8	D	140	146	Right-handed alpha
Helix 54	AF9	D	146	156	Right-handed alpha
Helix 55	AG1	D	169	184	Right-handed alpha
Helix 56	AG2	D	200	210	Right-handed alpha
Helix 57	AG3	D	210	225	Right-handed alpha
Helix 58	AG4	D	239	247	Right-handed alpha
Helix 59	AG5	D	248	250	Right-handed 310
Helix 60	AG6	D	274	279	Right-handed alpha
Helix 61	AG7	D	306	310	Right-handed 310
Helix 62	AG8	D	315	324	Right-handed alpha
Helix 63	AG9	D	334	349	Right-handed alpha
Helix 64	AH1	D	353	371	Right-handed alpha
Helix 65	AH2	D	384	386	Right-handed 310
Helix 66	AH3	D	387	402	Right-handed alpha

There are 11 sheets in PDB entry 5KIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	123	127	parallel
Strand 3	A	97	100	parallel
Strand 4	A	51	54	parallel
Strand 5	A	19	25	parallel
Strand 6	A	229	232	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	174	177	parallel
Strand 3	A	208	210	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	375	380	parallel
Strand 4	B	231	235	parallel
Strand 5	B	256	262	parallel
Strand 6	B	328	332	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	163	first strand
Strand 2	B	133	139	parallel
Strand 3	B	109	113	parallel
Strand 4	B	188	190	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	284	first strand
Strand 2	B	287	291	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	123	127	parallel
Strand 3	C	97	101	parallel
Strand 4	C	51	55	parallel
Strand 5	C	19	25	parallel
Strand 6	C	229	232	parallel
Strand 7	C	208	210	parallel
Strand 8	C	174	177	parallel
Strand 9	C	153	155	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	76	80	anti-parallel
Strand 3	D	375	379	parallel
Strand 4	D	231	235	parallel
Strand 5	D	256	264	parallel
Strand 6	D	328	333	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	163	first strand
Strand 2	D	133	139	parallel
Strand 3	D	109	113	parallel
Strand 4	D	188	190	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	284	first strand
Strand 2	D	287	291	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KIN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KIN