Analysis of interatomic Contacts of Structural Units in PDB entry:
5KIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KIW entry

There are 4 chains in PDB entry 5KIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 21ASN 460
B
 THR 14ASN 460
C
 ASP 73GLU 110
D
 HIS 43GLU 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5KIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 50Right-handed alpha
Helix 2
AA2
A
85 92Right-handed alpha
Helix 3
AA3
A
129 134Right-handed alpha
Helix 4
AA4
A
134 140Right-handed alpha
Helix 5
AA5
A
190 199Right-handed alpha
Helix 6
AA6
A
202 206Right-handed 310
Helix 7
AA7
A
209 220Right-handed alpha
Helix 8
AA8
A
220 226Right-handed alpha
Helix 9
AA9
A
226 233Right-handed alpha
Helix 10
AB1
A
250 262Right-handed alpha
Helix 11
AB2
A
271 277Right-handed alpha
Helix 12
AB3
A
280 296Right-handed alpha
Helix 13
AB4
A
306 309Right-handed 310
Helix 14
AB5
A
318 334Right-handed alpha
Helix 15
AB6
A
336 339Right-handed 310
Helix 16
AB7
A
349 353Right-handed 310
Helix 17
AB8
A
354 359Right-handed 310
Helix 18
AB9
A
373 385Right-handed alpha
Helix 19
AC1
A
395 403Right-handed alpha
Helix 20
AC2
A
407 423Right-handed alpha
Helix 21
AC3
A
424 427Right-handed 310
Helix 22
AC4
A
438 444Right-handed alpha
Helix 23
AC5
A
448 460Right-handed alpha
Helix 24
AC6
B
42 50Right-handed alpha
Helix 25
AC7
B
85 93Right-handed alpha
Helix 26
AC8
B
120 124Right-handed 310
Helix 27
AC9
B
129 134Right-handed alpha
Helix 28
AD1
B
134 140Right-handed alpha
Helix 29
AD2
B
190 199Right-handed alpha
Helix 30
AD3
B
202 206Right-handed 310
Helix 31
AD4
B
209 220Right-handed alpha
Helix 32
AD5
B
220 226Right-handed alpha
Helix 33
AD6
B
226 233Right-handed alpha
Helix 34
AD7
B
250 262Right-handed alpha
Helix 35
AD8
B
271 277Right-handed alpha
Helix 36
AD9
B
280 296Right-handed alpha
Helix 37
AE1
B
306 309Right-handed 310
Helix 38
AE2
B
318 334Right-handed alpha
Helix 39
AE3
B
336 339Right-handed 310
Helix 40
AE4
B
349 353Right-handed 310
Helix 41
AE5
B
354 359Right-handed 310
Helix 42
AE6
B
373 384Right-handed alpha
Helix 43
AE7
B
395 403Right-handed alpha
Helix 44
AE8
B
407 425Right-handed alpha
Helix 45
AE9
B
438 444Right-handed alpha
Helix 46
AF1
B
448 460Right-handed alpha
Helix 47
AF2
C
74 108Right-handed alpha
Helix 48
AF3
D
44 63Right-handed alpha
Helix 49
AF4
D
72 109Right-handed alpha
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There are 8 sheets in PDB entry 5KIW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
81 84parallel
Strand 3
A
38 41anti-parallel
Strand 4
A
66 73parallel
Strand 5
A
56 60anti-parallel
Strand 6
A
99 104anti-parallel
Strand 7
A
25 29anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
113 118anti-parallel
Strand 4
A
181 183parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
173 176anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
299 304parallel
Strand 3
A
341 347parallel
Strand 4
A
240 244parallel
Strand 5
A
365 368parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
81 84parallel
Strand 3
B
38 41anti-parallel
Strand 4
B
66 73parallel
Strand 5
B
56 60anti-parallel
Strand 6
B
99 104anti-parallel
Strand 7
B
25 29anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 155first strand
Strand 2
B
160 169anti-parallel
Strand 3
B
113 118anti-parallel
Strand 4
B
181 183parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
173 176anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 270first strand
Strand 2
B
299 304parallel
Strand 3
B
341 347parallel
Strand 4
B
240 244parallel
Strand 5
B
365 368parallel
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