Analysis of interatomic Contacts of Structural Units in PDB entry:
5KJ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KJ4 entry

There are 4 chains in PDB entry 5KJ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 898	GLU 1125
B	MET 898	GLU 1125
C	MET 898	HIS 1119
D	MET 898	HIS 1119

There are 16 helices in PDB entry 5KJ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	937	941	Right-handed 310
Helix 2	AA2	A	951	957	Right-handed alpha
Helix 3	AA3	A	1091	1096	Right-handed alpha
Helix 4	AA4	A	1102	1104	Right-handed 310
Helix 5	AA5	B	937	941	Right-handed 310
Helix 6	AA6	B	951	957	Right-handed alpha
Helix 7	AA7	B	1091	1096	Right-handed alpha
Helix 8	AA8	B	1102	1104	Right-handed 310
Helix 9	AA9	C	937	941	Right-handed 310
Helix 10	AB1	C	951	957	Right-handed alpha
Helix 11	AB2	C	1091	1096	Right-handed alpha
Helix 12	AB3	C	1102	1104	Right-handed 310
Helix 13	AB4	D	937	941	Right-handed 310
Helix 14	AB5	D	951	957	Right-handed alpha
Helix 15	AB6	D	1091	1096	Right-handed alpha
Helix 16	AB7	D	1102	1104	Right-handed 310

There are 28 sheets in PDB entry 5KJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	903	905	first strand
Strand 2	A	929	931	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	914	first strand
Strand 2	A	996	1005	parallel
Strand 3	A	980	988	anti-parallel
Strand 4	A	943	947	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	926	first strand
Strand 2	A	966	969	anti-parallel
Strand 3	A	958	960	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1013	1014	first strand
Strand 2	A	1039	1040	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1018	1019	first strand
Strand 2	A	1106	1114	parallel
Strand 3	A	1024	1025	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1018	1019	first strand
Strand 2	A	1106	1114	parallel
Strand 3	A	1081	1090	anti-parallel
Strand 4	A	1046	1052	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1067	1070	anti-parallel
Strand 3	A	1059	1061	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	903	905	first strand
Strand 2	B	929	931	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	914	first strand
Strand 2	B	996	1005	parallel
Strand 3	B	980	988	anti-parallel
Strand 4	B	943	947	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	923	926	first strand
Strand 2	B	966	969	anti-parallel
Strand 3	B	958	960	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1013	1014	first strand
Strand 2	B	1039	1040	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1018	1019	first strand
Strand 2	B	1106	1114	parallel
Strand 3	B	1024	1025	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1018	1019	first strand
Strand 2	B	1106	1114	parallel
Strand 3	B	1081	1090	anti-parallel
Strand 4	B	1046	1052	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1033	1036	first strand
Strand 2	B	1067	1070	anti-parallel
Strand 3	B	1059	1061	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	903	905	first strand
Strand 2	C	929	931	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	909	914	first strand
Strand 2	C	996	1005	parallel
Strand 3	C	980	988	anti-parallel
Strand 4	C	943	947	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	923	926	first strand
Strand 2	C	966	969	anti-parallel
Strand 3	C	958	960	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1013	1014	first strand
Strand 2	C	1039	1040	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1018	1019	first strand
Strand 2	C	1106	1114	parallel
Strand 3	C	1024	1025	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1018	1019	first strand
Strand 2	C	1106	1114	parallel
Strand 3	C	1081	1090	anti-parallel
Strand 4	C	1046	1052	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1036	first strand
Strand 2	C	1067	1070	anti-parallel
Strand 3	C	1059	1061	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	903	905	first strand
Strand 2	D	929	931	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	909	914	first strand
Strand 2	D	996	1005	parallel
Strand 3	D	980	988	anti-parallel
Strand 4	D	943	947	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	923	926	first strand
Strand 2	D	966	969	anti-parallel
Strand 3	D	958	960	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1013	1014	first strand
Strand 2	D	1039	1040	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1018	1019	first strand
Strand 2	D	1106	1114	parallel
Strand 3	D	1024	1025	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1018	1019	first strand
Strand 2	D	1106	1114	parallel
Strand 3	D	1081	1090	anti-parallel
Strand 4	D	1046	1052	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1033	1036	first strand
Strand 2	D	1067	1070	anti-parallel
Strand 3	D	1059	1061	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KJ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KJ4