Analysis of interatomic Contacts of Structural Units in PDB entry:
5KJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KJ8 entry

There are 11 chains in PDB entry 5KJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 27	TRP 89
B	ALA 191	LYS 256
C	ASN 9	GLY 82
D	ARG 142	GLY 204
E	LYS 141	VAL 419
F	LYS 141	VAL 419
G	GLY 27	TRP 89
H	ALA 191	VAL 255
I	GLU 10	LYS 83
J	ALA 141	LEU 203
K	LYS 141	VAL 419

There are 22 helices in PDB entry 5KJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	89	Right-handed alpha
Helix 2	AA2	B	192	255	Right-handed alpha
Helix 3	AA3	C	10	82	Right-handed alpha
Helix 4	AA4	D	143	202	Right-handed alpha
Helix 5	AA5	E	215	220	Right-handed alpha
Helix 6	AA6	E	248	250	Right-handed 310
Helix 7	AA7	E	351	354	Right-handed 310
Helix 8	AA8	E	384	396	Right-handed alpha
Helix 9	AA9	E	409	417	Right-handed alpha
Helix 10	AB1	F	215	220	Right-handed alpha
Helix 11	AB2	F	248	250	Right-handed 310
Helix 12	AB3	F	351	354	Right-handed 310
Helix 13	AB4	F	384	396	Right-handed alpha
Helix 14	AB5	F	409	417	Right-handed alpha
Helix 15	AB6	G	28	89	Right-handed alpha
Helix 16	AB7	H	192	254	Right-handed alpha
Helix 17	AB8	I	11	83	Right-handed alpha
Helix 18	AB9	J	143	202	Right-handed alpha
Helix 19	AC1	K	218	221	Right-handed 310
Helix 20	AC2	K	351	354	Right-handed 310
Helix 21	AC3	K	384	396	Right-handed alpha
Helix 22	AC4	K	409	417	Right-handed alpha

There are 12 sheets in PDB entry 5KJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	212	first strand
Strand 2	E	157	166	anti-parallel
Strand 3	E	144	152	anti-parallel
Strand 4	E	256	261	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	194	first strand
Strand 2	E	179	186	anti-parallel
Strand 3	E	223	230	anti-parallel
Strand 4	E	239	246	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	346	first strand
Strand 2	E	288	297	anti-parallel
Strand 3	E	275	283	anti-parallel
Strand 4	E	400	406	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	327	first strand
Strand 2	E	310	318	anti-parallel
Strand 3	E	356	363	anti-parallel
Strand 4	E	372	379	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	212	first strand
Strand 2	F	157	166	anti-parallel
Strand 3	F	144	152	anti-parallel
Strand 4	F	256	261	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	193	194	first strand
Strand 2	F	179	186	anti-parallel
Strand 3	F	223	230	anti-parallel
Strand 4	F	239	246	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	346	first strand
Strand 2	F	288	297	anti-parallel
Strand 3	F	275	283	anti-parallel
Strand 4	F	401	406	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	321	327	first strand
Strand 2	F	310	318	anti-parallel
Strand 3	F	356	363	anti-parallel
Strand 4	F	372	379	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	205	212	first strand
Strand 2	K	157	165	anti-parallel
Strand 3	K	144	152	anti-parallel
Strand 4	K	256	261	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	193	194	first strand
Strand 2	K	179	186	anti-parallel
Strand 3	K	223	230	anti-parallel
Strand 4	K	239	246	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	338	346	first strand
Strand 2	K	288	297	anti-parallel
Strand 3	K	275	283	anti-parallel
Strand 4	K	401	406	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	321	327	first strand
Strand 2	K	310	318	anti-parallel
Strand 3	K	356	363	anti-parallel
Strand 4	K	372	379	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KJ8