Analysis of interatomic Contacts of Structural Units in PDB entry:
5KJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KJP entry

There is 1 chain in PDB entry 5KJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11THR 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5KJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 33Right-handed 310
Helix 2
AA2
A
37 54Right-handed alpha
Helix 3
AA3
A
66 68Right-handed 310
Helix 4
AA4
A
74 80Right-handed alpha
Helix 5
AA5
A
112 121Right-handed alpha
Helix 6
AA6
A
134 140Right-handed 310
Helix 7
AA7
A
146 155Right-handed alpha
Helix 8
AA8
A
156 167Right-handed alpha
Helix 9
AA9
A
172 178Right-handed alpha
Helix 10
AB1
A
189 203Right-handed alpha
Helix 11
AB2
A
205 219Right-handed alpha
Helix 12
AB3
A
220 222Right-handed 310
Helix 13
AB4
A
226 240Right-handed alpha
Helix 14
AB5
A
241 253Right-handed alpha
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There are 3 sheets in PDB entry 5KJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 19first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
59 64parallel
Strand 4
A
102 106parallel
Strand 5
A
123 127parallel
Strand 6
A
183 185parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
90 91anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
131 133parallel
Strand 3
A
170 171anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il