Analysis of interatomic Contacts of Structural Units in PDB entry:
5KJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KJS entry

There is 1 chain in PDB entry 5KJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ILE 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5KJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
52 64Right-handed alpha
Helix 3
AA3
A
67 72Right-handed 310
Helix 4
AA4
A
101 106Right-handed 310
Helix 5
AA5
A
111 118Right-handed 310
Helix 6
AA6
A
157 173Right-handed alpha
Helix 7
AA7
A
184 189Right-handed 310
Helix 8
AA8
A
200 204Right-handed 310
Helix 9
AA9
A
219 221Right-handed 310
Helix 10
AB1
A
243 247Right-handed 310
Helix 11
AB2
A
252 269Right-handed alpha
Helix 12
AB3
A
311 317Right-handed alpha
Helix 13
AB4
A
318 333Right-handed alpha
Helix 14
AB5
A
334 348Right-handed alpha
Helix 15
AB6
A
350 355Right-handed 310
Helix 16
AB7
A
420 426Right-handed alpha
Helix 17
AB8
A
427 431Right-handed 310
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There are 4 sheets in PDB entry 5KJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
91 98anti-parallel
Strand 3
A
133 140parallel
Strand 4
A
145 151anti-parallel
Strand 5
A
36 42anti-parallel
Strand 6
A
388 391anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
73 76anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 230first strand
Strand 2
A
412 419anti-parallel
Strand 3
A
399 404anti-parallel
Strand 4
A
366 370parallel
Strand 5
A
276 284parallel
Strand 6
A
302 305anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 230first strand
Strand 2
A
412 419anti-parallel
Strand 3
A
399 404anti-parallel
Strand 4
A
366 370parallel
Strand 5
A
276 284parallel
Strand 6
A
308 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il