Analysis of interatomic Contacts of Structural Units in PDB entry:
5KJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KJV entry

There are 2 chains in PDB entry 5KJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 427
B
 MET 1LYS 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5KJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 30Right-handed alpha
Helix 2
AA2
A
52 67Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
101 106Right-handed 310
Helix 5
AA5
A
111 118Right-handed 310
Helix 6
AA6
A
157 173Right-handed alpha
Helix 7
AA7
A
184 189Right-handed 310
Helix 8
AA8
A
200 204Right-handed 310
Helix 9
AA9
A
225 235Right-handed alpha
Helix 10
AB1
A
236 241Right-handed 310
Helix 11
AB2
A
246 263Right-handed alpha
Helix 12
AB3
A
280 282Right-handed 310
Helix 13
AB4
A
305 311Right-handed alpha
Helix 14
AB5
A
312 326Right-handed alpha
Helix 15
AB6
A
328 341Right-handed alpha
Helix 16
AB7
A
344 349Right-handed 310
Helix 17
AB8
A
351 356Right-handed alpha
Helix 18
AB9
A
414 425Right-handed alpha
Helix 19
AC1
B
25 30Right-handed alpha
Helix 20
AC2
B
52 67Right-handed alpha
Helix 21
AC3
B
68 72Right-handed 310
Helix 22
AC4
B
101 106Right-handed 310
Helix 23
AC5
B
111 118Right-handed 310
Helix 24
AC6
B
157 173Right-handed alpha
Helix 25
AC7
B
184 189Right-handed 310
Helix 26
AC8
B
200 204Right-handed 310
Helix 27
AC9
B
225 235Right-handed alpha
Helix 28
AD1
B
236 241Right-handed 310
Helix 29
AD2
B
246 263Right-handed alpha
Helix 30
AD3
B
305 311Right-handed alpha
Helix 31
AD4
B
312 326Right-handed alpha
Helix 32
AD5
B
328 342Right-handed alpha
Helix 33
AD6
B
344 349Right-handed 310
Helix 34
AD7
B
351 356Right-handed alpha
Helix 35
AD8
B
413 425Right-handed alpha
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There are 8 sheets in PDB entry 5KJV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 11first strand
Strand 2
A
91 98anti-parallel
Strand 3
A
133 140parallel
Strand 4
A
145 152anti-parallel
Strand 5
A
35 42anti-parallel
Strand 6
A
382 385anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
73 76anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 224first strand
Strand 2
A
406 413anti-parallel
Strand 3
A
393 398anti-parallel
Strand 4
A
360 364parallel
Strand 5
A
270 278parallel
Strand 6
A
296 299anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 224first strand
Strand 2
A
406 413anti-parallel
Strand 3
A
393 398anti-parallel
Strand 4
A
360 364parallel
Strand 5
A
270 278parallel
Strand 6
A
302 304anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 11first strand
Strand 2
B
91 98anti-parallel
Strand 3
B
133 139parallel
Strand 4
B
145 152anti-parallel
Strand 5
B
35 42anti-parallel
Strand 6
B
382 385anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
82 86anti-parallel
Strand 3
B
73 76anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 224first strand
Strand 2
B
406 412anti-parallel
Strand 3
B
393 398anti-parallel
Strand 4
B
360 364parallel
Strand 5
B
270 278parallel
Strand 6
B
296 299anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 224first strand
Strand 2
B
406 412anti-parallel
Strand 3
B
393 398anti-parallel
Strand 4
B
360 364parallel
Strand 5
B
270 278parallel
Strand 6
B
302 304anti-parallel
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