Analysis of interatomic Contacts of Structural Units in PDB entry:
5KK2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KK2 entry

There are 8 chains in PDB entry 5KK2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 394	LYS 826
B	THR 394	LYS 826
C	THR 394	LYS 826
D	THR 394	LYS 826
E	ARG 6	THR 215
F	ARG 6	THR 215
G	ARG 6	THR 215
H	ARG 6	THR 215

There are 85 helices in PDB entry 5KK2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	411	415	Right-handed 310
Helix 2	AA2	A	416	419	Right-handed 310
Helix 3	AA3	A	423	437	Right-handed alpha
Helix 4	AA4	A	462	469	Right-handed alpha
Helix 5	AA5	A	482	487	Right-handed alpha
Helix 6	AA6	A	522	545	Right-handed alpha
Helix 7	AA7	A	566	582	Right-handed alpha
Helix 8	AA8	A	596	630	Right-handed alpha
Helix 9	AA9	A	635	642	Right-handed alpha
Helix 10	AB1	A	653	662	Right-handed alpha
Helix 11	AB2	A	664	677	Right-handed alpha
Helix 12	AB3	A	685	695	Right-handed alpha
Helix 13	AB4	A	706	714	Right-handed alpha
Helix 14	AB5	A	741	756	Right-handed alpha
Helix 15	AB6	A	757	768	Right-handed alpha
Helix 16	AB7	A	788	826	Right-handed alpha
Helix 17	AB8	B	411	415	Right-handed 310
Helix 18	AB9	B	416	419	Right-handed 310
Helix 19	AC1	B	423	437	Right-handed alpha
Helix 20	AC2	B	462	469	Right-handed alpha
Helix 21	AC3	B	482	487	Right-handed alpha
Helix 22	AC4	B	515	519	Right-handed 310
Helix 23	AC5	B	522	545	Right-handed alpha
Helix 24	AC6	B	565	582	Right-handed alpha
Helix 25	AC7	B	596	626	Right-handed alpha
Helix 26	AC8	B	636	642	Right-handed alpha
Helix 27	AC9	B	653	662	Right-handed alpha
Helix 28	AD1	B	664	677	Right-handed alpha
Helix 29	AD2	B	685	695	Right-handed alpha
Helix 30	AD3	B	706	714	Right-handed alpha
Helix 31	AD4	B	741	756	Right-handed alpha
Helix 32	AD5	B	757	768	Right-handed alpha
Helix 33	AD6	B	789	826	Right-handed alpha
Helix 34	AD7	C	411	415	Right-handed 310
Helix 35	AD8	C	416	419	Right-handed 310
Helix 36	AD9	C	423	437	Right-handed alpha
Helix 37	AE1	C	462	469	Right-handed alpha
Helix 38	AE2	C	482	487	Right-handed alpha
Helix 39	AE3	C	522	545	Right-handed alpha
Helix 40	AE4	C	565	582	Right-handed alpha
Helix 41	AE5	C	596	629	Right-handed alpha
Helix 42	AE6	C	635	642	Right-handed alpha
Helix 43	AE7	C	653	662	Right-handed alpha
Helix 44	AE8	C	664	677	Right-handed alpha
Helix 45	AE9	C	685	695	Right-handed alpha
Helix 46	AF1	C	706	714	Right-handed alpha
Helix 47	AF2	C	741	756	Right-handed alpha
Helix 48	AF3	C	757	768	Right-handed alpha
Helix 49	AF4	C	788	826	Right-handed alpha
Helix 50	AF5	D	411	415	Right-handed 310
Helix 51	AF6	D	416	419	Right-handed 310
Helix 52	AF7	D	423	437	Right-handed alpha
Helix 53	AF8	D	462	469	Right-handed alpha
Helix 54	AF9	D	482	487	Right-handed alpha
Helix 55	AG1	D	515	519	Right-handed 310
Helix 56	AG2	D	522	545	Right-handed alpha
Helix 57	AG3	D	566	570	Right-handed 310
Helix 58	AG4	D	572	582	Right-handed alpha
Helix 59	AG5	D	596	626	Right-handed alpha
Helix 60	AG6	D	636	642	Right-handed alpha
Helix 61	AG7	D	653	662	Right-handed alpha
Helix 62	AG8	D	664	677	Right-handed alpha
Helix 63	AG9	D	685	695	Right-handed alpha
Helix 64	AH1	D	706	714	Right-handed alpha
Helix 65	AH2	D	741	756	Right-handed alpha
Helix 66	AH3	D	757	768	Right-handed alpha
Helix 67	AH4	D	789	826	Right-handed alpha
Helix 68	AH5	E	7	29	Right-handed alpha
Helix 69	AH6	E	91	123	Right-handed alpha
Helix 70	AH7	E	132	159	Right-handed alpha
Helix 71	AH8	E	160	162	Right-handed 310
Helix 72	AH9	E	177	213	Right-handed alpha
Helix 73	AI1	F	7	29	Right-handed alpha
Helix 74	AI2	F	92	123	Right-handed alpha
Helix 75	AI3	F	133	162	Right-handed alpha
Helix 76	AI4	F	177	213	Right-handed alpha
Helix 77	AI5	G	7	29	Right-handed alpha
Helix 78	AI6	G	91	123	Right-handed alpha
Helix 79	AI7	G	132	159	Right-handed alpha
Helix 80	AI8	G	160	162	Right-handed 310
Helix 81	AI9	G	177	213	Right-handed alpha
Helix 82	AJ1	H	7	29	Right-handed alpha
Helix 83	AJ2	H	92	123	Right-handed alpha
Helix 84	AJ3	H	132	162	Right-handed alpha
Helix 85	AJ4	H	177	213	Right-handed alpha

There are 28 sheets in PDB entry 5KK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	460	461	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	491	first strand
Strand 2	A	735	737	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	730	732	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	B	460	461	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	460	461	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	491	first strand
Strand 2	C	735	737	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	453	first strand
Strand 2	D	460	461	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	64	67	anti-parallel
Strand 3	E	75	78	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	59	first strand
Strand 2	F	64	67	anti-parallel
Strand 3	F	75	78	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	59	first strand
Strand 2	G	64	67	anti-parallel
Strand 3	G	75	78	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	59	first strand
Strand 2	H	64	67	anti-parallel
Strand 3	H	75	78	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KK2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KK2