Analysis of interatomic Contacts of Structural Units in PDB entry:
5KK7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KK7 entry

There are 2 chains in PDB entry 5KK7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 245	ALA 699
B	HIS 245	ALA 699

There are 36 helices in PDB entry 5KK7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	247	268	Right-handed alpha
Helix 2	AA2	A	288	301	Right-handed alpha
Helix 3	AA3	A	303	318	Right-handed alpha
Helix 4	AA4	A	328	347	Right-handed alpha
Helix 5	AA5	A	348	363	Right-handed alpha
Helix 6	AA6	A	364	367	Right-handed 310
Helix 7	AA7	A	395	400	Right-handed alpha
Helix 8	AA8	A	401	413	Right-handed alpha
Helix 9	AA9	A	415	430	Right-handed alpha
Helix 10	AB1	A	462	476	Right-handed alpha
Helix 11	AB2	A	480	498	Right-handed alpha
Helix 12	AB3	A	527	539	Right-handed alpha
Helix 13	AB4	A	542	562	Right-handed alpha
Helix 14	AB5	A	588	592	Right-handed 310
Helix 15	AB6	A	598	612	Right-handed alpha
Helix 16	AB7	A	614	632	Right-handed alpha
Helix 17	AB8	A	657	663	Right-handed alpha
Helix 18	AB9	A	663	673	Right-handed alpha
Helix 19	AC1	B	247	268	Right-handed alpha
Helix 20	AC2	B	288	301	Right-handed alpha
Helix 21	AC3	B	303	318	Right-handed alpha
Helix 22	AC4	B	328	347	Right-handed alpha
Helix 23	AC5	B	348	363	Right-handed alpha
Helix 24	AC6	B	364	367	Right-handed 310
Helix 25	AC7	B	395	400	Right-handed alpha
Helix 26	AC8	B	401	413	Right-handed alpha
Helix 27	AC9	B	415	430	Right-handed alpha
Helix 28	AD1	B	462	476	Right-handed alpha
Helix 29	AD2	B	480	498	Right-handed alpha
Helix 30	AD3	B	527	539	Right-handed alpha
Helix 31	AD4	B	542	562	Right-handed alpha
Helix 32	AD5	B	588	592	Right-handed 310
Helix 33	AD6	B	598	612	Right-handed alpha
Helix 34	AD7	B	614	632	Right-handed alpha
Helix 35	AD8	B	658	663	Right-handed alpha
Helix 36	AD9	B	663	673	Right-handed alpha

There are 14 sheets in PDB entry 5KK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	280	282	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	376	378	anti-parallel
Strand 3	A	384	385	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	394	first strand
Strand 2	A	442	444	anti-parallel
Strand 3	A	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	512	514	anti-parallel
Strand 3	A	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	501	first strand
Strand 2	A	508	510	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	571	574	anti-parallel
Strand 3	A	585	586	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	686	first strand
Strand 2	A	692	694	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	275	first strand
Strand 2	B	280	282	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	376	378	anti-parallel
Strand 3	B	384	385	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	394	first strand
Strand 2	B	442	444	anti-parallel
Strand 3	B	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	512	514	anti-parallel
Strand 3	B	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	501	first strand
Strand 2	B	508	510	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	523	first strand
Strand 2	B	571	574	anti-parallel
Strand 3	B	585	586	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	686	first strand
Strand 2	B	692	694	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KK7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KK7