Analysis of interatomic Contacts of Structural Units in PDB entry:
5KKB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KKB entry

There are 2 chains in PDB entry 5KKB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 176	ARG 644
B	VAL 176	ARG 644

There are 44 helices in PDB entry 5KKB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	191	217	Right-handed alpha
Helix 2	AA2	A	232	236	Right-handed 310
Helix 3	AA3	A	240	253	Right-handed alpha
Helix 4	AA4	A	255	270	Right-handed alpha
Helix 5	AA5	A	280	299	Right-handed alpha
Helix 6	AA6	A	300	315	Right-handed alpha
Helix 7	AA7	A	316	319	Right-handed 310
Helix 8	AA8	A	342	346	Right-handed 310
Helix 9	AA9	A	349	353	Right-handed alpha
Helix 10	AB1	A	355	367	Right-handed alpha
Helix 11	AB2	A	369	385	Right-handed alpha
Helix 12	AB3	A	387	391	Right-handed 310
Helix 13	AB4	A	414	428	Right-handed alpha
Helix 14	AB5	A	432	450	Right-handed alpha
Helix 15	AB6	A	476	478	Right-handed 310
Helix 16	AB7	A	479	487	Right-handed alpha
Helix 17	AB8	A	494	516	Right-handed alpha
Helix 18	AB9	A	538	542	Right-handed 310
Helix 19	AC1	A	548	562	Right-handed alpha
Helix 20	AC2	A	563	581	Right-handed alpha
Helix 21	AC3	A	605	611	Right-handed alpha
Helix 22	AC4	A	611	620	Right-handed alpha
Helix 23	AC5	B	191	217	Right-handed alpha
Helix 24	AC6	B	232	236	Right-handed 310
Helix 25	AC7	B	240	253	Right-handed alpha
Helix 26	AC8	B	255	270	Right-handed alpha
Helix 27	AC9	B	280	299	Right-handed alpha
Helix 28	AD1	B	300	315	Right-handed alpha
Helix 29	AD2	B	316	319	Right-handed 310
Helix 30	AD3	B	342	346	Right-handed 310
Helix 31	AD4	B	349	353	Right-handed alpha
Helix 32	AD5	B	355	367	Right-handed alpha
Helix 33	AD6	B	369	385	Right-handed alpha
Helix 34	AD7	B	387	391	Right-handed 310
Helix 35	AD8	B	414	428	Right-handed alpha
Helix 36	AD9	B	432	450	Right-handed alpha
Helix 37	AE1	B	476	478	Right-handed 310
Helix 38	AE2	B	479	487	Right-handed alpha
Helix 39	AE3	B	495	516	Right-handed alpha
Helix 40	AE4	B	538	542	Right-handed 310
Helix 41	AE5	B	548	562	Right-handed alpha
Helix 42	AE6	B	563	581	Right-handed alpha
Helix 43	AE7	B	605	611	Right-handed alpha
Helix 44	AE8	B	611	620	Right-handed alpha

There are 16 sheets in PDB entry 5KKB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	228	230	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	A	328	330	anti-parallel
Strand 3	A	335	337	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	395	396	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	463	465	anti-parallel
Strand 3	A	468	470	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	459	461	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	474	first strand
Strand 2	A	525	528	anti-parallel
Strand 3	A	533	535	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	583	first strand
Strand 2	A	586	587	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	633	first strand
Strand 2	A	639	641	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	228	230	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	328	330	anti-parallel
Strand 3	B	335	337	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	395	396	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	463	465	anti-parallel
Strand 3	B	468	470	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	B	459	461	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	474	first strand
Strand 2	B	525	527	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	582	583	first strand
Strand 2	B	586	587	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	633	first strand
Strand 2	B	639	641	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KKB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KKB