Analysis of interatomic Contacts of Structural Units in PDB entry:
5KKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KKG entry

There are 2 chains in PDB entry 5KKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 451
B
 GLN -2LYS 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5KKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 6Right-handed 310
Helix 2
AA2
A
24 36Right-handed alpha
Helix 3
AA3
A
36 47Right-handed alpha
Helix 4
AA4
A
53 68Right-handed alpha
Helix 5
AA5
A
77 79Right-handed 310
Helix 6
AA6
A
80 88Right-handed alpha
Helix 7
AA7
A
97 109Right-handed alpha
Helix 8
AA8
A
122 127Right-handed alpha
Helix 9
AA9
A
147 151Right-handed 310
Helix 10
AB1
A
202 207Right-handed alpha
Helix 11
AB2
A
208 215Right-handed alpha
Helix 12
AB3
A
223 227Right-handed 310
Helix 13
AB4
A
236 252Right-handed alpha
Helix 14
AB5
A
267 278Right-handed alpha
Helix 15
AB6
A
279 282Right-handed 310
Helix 16
AB7
A
288 299Right-handed alpha
Helix 17
AB8
A
301 311Right-handed alpha
Helix 18
AB9
A
313 328Right-handed alpha
Helix 19
AC1
A
352 374Right-handed alpha
Helix 20
AC2
A
378 380Right-handed 310
Helix 21
AC3
A
381 387Right-handed alpha
Helix 22
AC4
A
391 405Right-handed alpha
Helix 23
AC5
A
431 451Right-handed alpha
Helix 24
AC6
B
24 35Right-handed alpha
Helix 25
AC7
B
36 47Right-handed alpha
Helix 26
AC8
B
53 68Right-handed alpha
Helix 27
AC9
B
77 79Right-handed 310
Helix 28
AD1
B
80 88Right-handed alpha
Helix 29
AD2
B
97 109Right-handed alpha
Helix 30
AD3
B
122 127Right-handed alpha
Helix 31
AD4
B
147 151Right-handed 310
Helix 32
AD5
B
205 207Right-handed 310
Helix 33
AD6
B
208 216Right-handed alpha
Helix 34
AD7
B
223 227Right-handed 310
Helix 35
AD8
B
236 252Right-handed alpha
Helix 36
AD9
B
267 278Right-handed alpha
Helix 37
AE1
B
288 300Right-handed alpha
Helix 38
AE2
B
301 311Right-handed alpha
Helix 39
AE3
B
313 328Right-handed alpha
Helix 40
AE4
B
352 374Right-handed alpha
Helix 41
AE5
B
378 380Right-handed 310
Helix 42
AE6
B
381 387Right-handed alpha
Helix 43
AE7
B
391 405Right-handed alpha
Helix 44
AE8
B
409 411Right-handed 310
Helix 45
AE9
B
432 449Right-handed alpha
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There are 8 sheets in PDB entry 5KKG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
8 12parallel
Strand 3
A
218 221parallel
Strand 4
A
257 261parallel
Strand 5
A
284 287parallel
Strand 6
A
332 336parallel
Strand 7
A
340 346anti-parallel
Strand 8
A
413 419anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
185 189parallel
Strand 3
A
160 166anti-parallel
Strand 4
A
16 22parallel
Strand 5
A
92 96anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
142 146anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
177 180anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
8 12parallel
Strand 3
B
218 221parallel
Strand 4
B
257 261parallel
Strand 5
B
284 287parallel
Strand 6
B
332 336parallel
Strand 7
B
340 346anti-parallel
Strand 8
B
413 419anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 75first strand
Strand 2
B
185 191parallel
Strand 3
B
160 166anti-parallel
Strand 4
B
16 23parallel
Strand 5
B
92 96anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
142 146anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 174first strand
Strand 2
B
177 180anti-parallel
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