Analysis of interatomic Contacts of Structural Units in PDB entry:
5KKN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KKN entry

There are 2 chains in PDB entry 5KKN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 241ILE 760
C
 ASP 241ILE 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5KKN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
246 254Right-handed alpha
Helix 2
AA2
B
268 288Right-handed alpha
Helix 3
AA3
B
300 306Right-handed alpha
Helix 4
AA4
B
308 314Right-handed alpha
Helix 5
AA5
B
327 330Right-handed 310
Helix 6
AA6
B
331 342Right-handed alpha
Helix 7
AA7
B
358 367Right-handed alpha
Helix 8
AA8
B
375 382Right-handed alpha
Helix 9
AA9
B
384 395Right-handed alpha
Helix 10
AB1
B
425 433Right-handed alpha
Helix 11
AB2
B
436 448Right-handed alpha
Helix 12
AB3
B
472 484Right-handed alpha
Helix 13
AB4
B
540 558Right-handed alpha
Helix 14
AB5
B
589 597Right-handed alpha
Helix 15
AB6
B
599 609Right-handed alpha
Helix 16
AB7
B
612 615Right-handed 310
Helix 17
AB8
B
616 623Right-handed alpha
Helix 18
AB9
B
709 725Right-handed alpha
Helix 19
AC1
B
730 742Right-handed alpha
Helix 20
AC2
B
743 748Right-handed alpha
Helix 21
AC3
C
246 255Right-handed alpha
Helix 22
AC4
C
268 288Right-handed alpha
Helix 23
AC5
C
300 307Right-handed alpha
Helix 24
AC6
C
308 314Right-handed alpha
Helix 25
AC7
C
327 330Right-handed 310
Helix 26
AC8
C
331 342Right-handed alpha
Helix 27
AC9
C
358 367Right-handed alpha
Helix 28
AD1
C
375 384Right-handed alpha
Helix 29
AD2
C
384 395Right-handed alpha
Helix 30
AD3
C
425 433Right-handed alpha
Helix 31
AD4
C
436 448Right-handed alpha
Helix 32
AD5
C
472 484Right-handed alpha
Helix 33
AD6
C
540 558Right-handed alpha
Helix 34
AD7
C
589 597Right-handed alpha
Helix 35
AD8
C
599 609Right-handed alpha
Helix 36
AD9
C
612 615Right-handed 310
Helix 37
AE1
C
616 623Right-handed alpha
Helix 38
AE2
C
709 724Right-handed alpha
Helix 39
AE3
C
734 742Right-handed alpha
Helix 40
AE4
C
743 749Right-handed alpha
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There are 6 sheets in PDB entry 5KKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 319first strand
Strand 2
B
294 299parallel
Strand 3
B
262 265parallel
Strand 4
B
346 348parallel
Strand 5
B
370 371parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 467first strand
Strand 2
B
451 455anti-parallel
Strand 3
B
489 493anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 582first strand
Strand 2
B
562 571anti-parallel
Strand 3
B
498 507anti-parallel
Strand 4
B
513 525anti-parallel
Strand 5
B
528 534anti-parallel
Strand 6
B
647 653anti-parallel
Strand 7
B
700 707anti-parallel
Strand 8
B
680 685anti-parallel
Strand 9
B
669 673anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
316 319first strand
Strand 2
C
294 299parallel
Strand 3
C
262 265parallel
Strand 4
C
346 348parallel
Strand 5
C
370 371parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
464 467first strand
Strand 2
C
451 455anti-parallel
Strand 3
C
489 493anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
576 582first strand
Strand 2
C
562 571anti-parallel
Strand 3
C
498 507anti-parallel
Strand 4
C
513 525anti-parallel
Strand 5
C
528 534anti-parallel
Strand 6
C
647 653anti-parallel
Strand 7
C
701 707anti-parallel
Strand 8
C
680 683anti-parallel
Strand 9
C
671 673anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il