Analysis of interatomic Contacts of Structural Units in PDB entry:
5KKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KKP entry

There is 1 chain in PDB entry 5KKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 108ILE 649
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5KKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 115Right-handed 310
Helix 2
AA2
A
133 135Right-handed 310
Helix 3
AA3
A
165 178Right-handed alpha
Helix 4
AA4
A
200 214Right-handed alpha
Helix 5
AA5
A
268 281Right-handed alpha
Helix 6
AA6
A
283 285Right-handed 310
Helix 7
AA7
A
309 316Right-handed alpha
Helix 8
AA8
A
317 320Right-handed 310
Helix 9
AA9
A
355 369Right-handed alpha
Helix 10
AB1
A
376 381Right-handed 310
Helix 11
AB2
A
386 396Right-handed alpha
Helix 12
AB3
A
398 408Right-handed alpha
Helix 13
AB4
A
416 429Right-handed alpha
Helix 14
AB5
A
430 436Right-handed alpha
Helix 15
AB6
A
443 456Right-handed alpha
Helix 16
AB7
A
459 465Right-handed alpha
Helix 17
AB8
A
468 496Right-handed alpha
Helix 18
AB9
A
518 522Right-handed 310
Helix 19
AC1
A
523 525Right-handed 310
Helix 20
AC2
A
542 554Right-handed alpha
Helix 21
AC3
A
565 569Right-handed 310
Helix 22
AC4
A
601 608Right-handed alpha
Helix 23
AC5
A
634 644Right-handed alpha
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There are 5 sheets in PDB entry 5KKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
298 306anti-parallel
Strand 3
A
257 265anti-parallel
Strand 4
A
323 331anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
298 306anti-parallel
Strand 3
A
137 142parallel
Strand 4
A
342 349anti-parallel
Strand 5
A
620 629anti-parallel
Strand 6
A
582 591anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
228 234anti-parallel
Strand 3
A
219 225anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
578 579anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 513first strand
Strand 2
A
504 507anti-parallel
Strand 3
A
527 531anti-parallel
Strand 4
A
573 576anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il