Analysis of interatomic Contacts of Structural Units in PDB entry:
5KKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KKR entry

There are 2 chains in PDB entry 5KKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 650PRO 932
C
 GLU 41LEU 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5KKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
655 659Right-handed 310
Helix 2
AA2
B
710 715Right-handed 310
Helix 3
AA3
B
747 752Right-handed alpha
Helix 4
AA4
B
759 781Right-handed alpha
Helix 5
AA5
B
788 790Right-handed 310
Helix 6
AA6
B
852 869Right-handed alpha
Helix 7
AA7
B
878 888Right-handed alpha
Helix 8
AA8
B
904 911Right-handed alpha
Helix 9
AA9
B
914 918Right-handed 310
Helix 10
AB1
B
920 929Right-handed alpha
Helix 11
AB2
C
43 56Right-handed alpha
Helix 12
AB3
C
104 112Right-handed alpha
Helix 13
AB4
C
113 120Right-handed 310
Helix 14
AB5
C
150 159Right-handed alpha
Helix 15
AB6
C
162 183Right-handed alpha
Helix 16
AB7
C
212 219Right-handed alpha
Helix 17
AB8
C
231 236Right-handed alpha
Helix 18
AB9
C
243 259Right-handed alpha
Helix 19
AC1
C
270 274Right-handed 310
Helix 20
AC2
C
309 320Right-handed alpha
Helix 21
AC3
C
331 342Right-handed alpha
Helix 22
AC4
C
351 357Right-handed alpha
Helix 23
AC5
C
358 365Right-handed alpha
Helix 24
AC6
C
370 376Right-handed alpha
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There are 5 sheets in PDB entry 5KKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
679 681first strand
Strand 2
B
689 693anti-parallel
Strand 3
B
736 740anti-parallel
Strand 4
B
727 729anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
745 746first strand
Strand 2
B
792 794anti-parallel
Strand 3
B
800 801anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 69first strand
Strand 2
C
86 87anti-parallel
Strand 3
C
92 93anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
95 100anti-parallel
Strand 3
C
138 143anti-parallel
Strand 4
C
129 135anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 198first strand
Strand 2
C
204 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il