Analysis of interatomic Contacts of Structural Units in PDB entry:
5KKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KKX entry

There are 2 chains in PDB entry 5KKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 380PRO 612
B
 THR 379PRO 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 5KKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
469 473Right-handed 310
Helix 2
AA2
A
581 584Right-handed 310
Helix 3
AA3
B
469 473Right-handed 310
Helix 4
AA4
B
581 584Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5KKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 396first strand
Strand 2
A
382 388anti-parallel
Strand 3
A
458 466anti-parallel
Strand 4
A
445 453anti-parallel
Strand 5
A
431 438anti-parallel
Strand 6
A
421 428anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 408first strand
Strand 2
A
411 414anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 497first strand
Strand 2
A
479 490anti-parallel
Strand 3
A
599 609anti-parallel
Strand 4
A
586 595anti-parallel
Strand 5
A
573 580anti-parallel
Strand 6
A
543 549anti-parallel
Strand 7
A
533 540anti-parallel
Strand 8
A
518 524anti-parallel
Strand 9
A
507 513anti-parallel
Strand 10
A
479 490anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 556first strand
Strand 2
A
567 568anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 396first strand
Strand 2
B
382 388anti-parallel
Strand 3
B
458 466anti-parallel
Strand 4
B
445 452anti-parallel
Strand 5
B
431 438anti-parallel
Strand 6
B
421 428anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 408first strand
Strand 2
B
411 414anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 497first strand
Strand 2
B
479 490anti-parallel
Strand 3
B
599 609anti-parallel
Strand 4
B
586 595anti-parallel
Strand 5
B
573 580anti-parallel
Strand 6
B
543 549anti-parallel
Strand 7
B
533 540anti-parallel
Strand 8
B
518 524anti-parallel
Strand 9
B
507 513anti-parallel
Strand 10
B
479 490anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
555 556first strand
Strand 2
B
567 568anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il