Analysis of interatomic Contacts of Structural Units in PDB entry:
5KL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KL9 entry

There are 4 chains in PDB entry 5KL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 134
B
 THR 4LYS 133
C
 THR 4PHE 132
D
 THR 4PHE 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5KL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
24 43Right-handed alpha
Helix 3
AA3
A
46 53Right-handed alpha
Helix 4
AA4
A
125 132Right-handed alpha
Helix 5
AA5
B
13 17Right-handed 310
Helix 6
AA6
B
24 43Right-handed alpha
Helix 7
AA7
B
46 53Right-handed alpha
Helix 8
AA8
B
125 132Right-handed alpha
Helix 9
AA9
C
13 17Right-handed 310
Helix 10
AB1
C
24 43Right-handed alpha
Helix 11
AB2
C
46 51Right-handed alpha
Helix 12
AB3
D
13 17Right-handed 310
Helix 13
AB4
D
24 43Right-handed alpha
Helix 14
AB5
D
125 132Right-handed alpha
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There are 2 sheets in PDB entry 5KL9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
75 85anti-parallel
Strand 3
A
89 97anti-parallel
Strand 4
A
103 114anti-parallel
Strand 5
A
56 66anti-parallel
Strand 6
D
56 66anti-parallel
Strand 7
D
103 114anti-parallel
Strand 8
D
89 97anti-parallel
Strand 9
D
75 85anti-parallel
Strand 10
D
6 11anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
75 85anti-parallel
Strand 3
B
89 97anti-parallel
Strand 4
B
103 114anti-parallel
Strand 5
B
56 66anti-parallel
Strand 6
C
56 66anti-parallel
Strand 7
C
103 114anti-parallel
Strand 8
C
89 97anti-parallel
Strand 9
C
75 85anti-parallel
Strand 10
C
6 11anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il