Analysis of interatomic Contacts of Structural Units in PDB entry:
5KLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KLH entry

There are 2 chains in PDB entry 5KLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 38VAL 258
B
 ASP 42PHE 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5KLH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 55Right-handed alpha
Helix 2
AA2
A
57 63Right-handed 310
Helix 3
AA3
A
136 140Right-handed 310
Helix 4
AA4
A
143 147Right-handed 310
Helix 5
AA5
A
149 163Right-handed alpha
Helix 6
AA6
A
241 250Right-handed alpha
Helix 7
AA7
B
43 55Right-handed alpha
Helix 8
AA8
B
57 63Right-handed 310
Helix 9
AA9
B
136 140Right-handed 310
Helix 10
AB1
B
149 163Right-handed alpha
Helix 11
AB2
B
241 250Right-handed alpha
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There are 11 sheets in PDB entry 5KLH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
65 67anti-parallel
Strand 3
A
106 113anti-parallel
Strand 4
A
102 103anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
65 67anti-parallel
Strand 3
A
106 113anti-parallel
Strand 4
A
119 124anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 81first strand
Strand 2
A
85 97anti-parallel
Strand 3
A
231 238anti-parallel
Strand 4
A
179 198parallel
Strand 5
A
204 206anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 81first strand
Strand 2
A
85 97anti-parallel
Strand 3
A
231 238anti-parallel
Strand 4
A
179 198parallel
Strand 5
A
166 169anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 81first strand
Strand 2
A
85 97anti-parallel
Strand 3
A
231 238anti-parallel
Strand 4
A
179 198parallel
Strand 5
A
223 225anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 81first strand
Strand 2
A
85 97anti-parallel
Strand 3
A
231 238anti-parallel
Strand 4
A
179 198parallel
Strand 5
A
126 134anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
65 67anti-parallel
Strand 3
B
106 113anti-parallel
Strand 4
B
119 124anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
88 97anti-parallel
Strand 3
B
231 238anti-parallel
Strand 4
B
179 198parallel
Strand 5
B
204 206anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
88 97anti-parallel
Strand 3
B
231 238anti-parallel
Strand 4
B
179 198parallel
Strand 5
B
166 169anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
88 97anti-parallel
Strand 3
B
231 238anti-parallel
Strand 4
B
179 198parallel
Strand 5
B
223 225anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
88 97anti-parallel
Strand 3
B
231 238anti-parallel
Strand 4
B
179 198parallel
Strand 5
B
126 134anti-parallel
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