Analysis of interatomic Contacts of Structural Units in PDB entry:
5KMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KMD entry

There are 4 chains in PDB entry 5KMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1001ASP 1219
B
 MET 1001ASP 1219
C
 MET 1001ASP 1219
D
 MET 1001ASP 1219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 5KMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1003 1011Right-handed alpha
Helix 2
AA2
A
1013 1032Right-handed alpha
Helix 3
AA3
A
1036 1041Right-handed alpha
Helix 4
AA4
A
1041 1068Right-handed alpha
Helix 5
AA5
A
1069 1073Right-handed 310
Helix 6
AA6
A
1074 1087Right-handed alpha
Helix 7
AA7
A
1097 1102Right-handed alpha
Helix 8
AA8
A
1103 1106Right-handed 310
Helix 9
AA9
A
1107 1113Right-handed alpha
Helix 10
AB1
A
1115 1125Right-handed alpha
Helix 11
AB2
A
1126 1153Right-handed alpha
Helix 12
AB3
A
1156 1161Right-handed alpha
Helix 13
AB4
A
1162 1175Right-handed alpha
Helix 14
AB5
A
1183 1191Right-handed alpha
Helix 15
AB6
A
1193 1219Right-handed alpha
Helix 16
AB7
B
1002 1010Right-handed alpha
Helix 17
AB8
B
1011 1032Right-handed alpha
Helix 18
AB9
B
1034 1068Right-handed alpha
Helix 19
AC1
B
1069 1073Right-handed 310
Helix 20
AC2
B
1074 1089Right-handed alpha
Helix 21
AC3
B
1096 1102Right-handed alpha
Helix 22
AC4
B
1103 1106Right-handed 310
Helix 23
AC5
B
1107 1112Right-handed alpha
Helix 24
AC6
B
1113 1153Right-handed alpha
Helix 25
AC7
B
1156 1161Right-handed alpha
Helix 26
AC8
B
1162 1175Right-handed alpha
Helix 27
AC9
B
1183 1191Right-handed alpha
Helix 28
AD1
B
1194 1219Right-handed alpha
Helix 29
AD2
C
1002 1010Right-handed alpha
Helix 30
AD3
C
1013 1032Right-handed alpha
Helix 31
AD4
C
1034 1042Right-handed alpha
Helix 32
AD5
C
1042 1068Right-handed alpha
Helix 33
AD6
C
1069 1073Right-handed 310
Helix 34
AD7
C
1074 1086Right-handed alpha
Helix 35
AD8
C
1087 1089Right-handed 310
Helix 36
AD9
C
1096 1102Right-handed alpha
Helix 37
AE1
C
1103 1106Right-handed 310
Helix 38
AE2
C
1107 1113Right-handed alpha
Helix 39
AE3
C
1113 1153Right-handed alpha
Helix 40
AE4
C
1156 1161Right-handed alpha
Helix 41
AE5
C
1162 1175Right-handed alpha
Helix 42
AE6
C
1183 1191Right-handed alpha
Helix 43
AE7
C
1194 1219Right-handed alpha
Helix 44
AE8
D
1002 1010Right-handed alpha
Helix 45
AE9
D
1011 1032Right-handed alpha
Helix 46
AF1
D
1034 1068Right-handed alpha
Helix 47
AF2
D
1069 1073Right-handed 310
Helix 48
AF3
D
1074 1086Right-handed alpha
Helix 49
AF4
D
1087 1089Right-handed 310
Helix 50
AF5
D
1096 1102Right-handed alpha
Helix 51
AF6
D
1103 1106Right-handed 310
Helix 52
AF7
D
1107 1112Right-handed alpha
Helix 53
AF8
D
1113 1125Right-handed alpha
Helix 54
AF9
D
1130 1153Right-handed alpha
Helix 55
AG1
D
1156 1161Right-handed alpha
Helix 56
AG2
D
1162 1175Right-handed alpha
Helix 57
AG3
D
1183 1191Right-handed alpha
Helix 58
AG4
D
1194 1219Right-handed alpha
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There are no sheets in PDB entry 5KMD
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