Analysis of interatomic Contacts of Structural Units in PDB entry:
5KMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KMG entry

There are 3 chains in PDB entry 5KMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 441
B
 MET 1ASP 441
P
 GLY 337TYR 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5KMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
71 80Right-handed alpha
Helix 3
AA3
A
83 87Right-handed 310
Helix 4
AA4
A
88 90Right-handed 310
Helix 5
AA5
A
102 108Right-handed alpha
Helix 6
AA6
A
110 113Right-handed 310
Helix 7
AA7
A
114 127Right-handed alpha
Helix 8
AA8
A
143 161Right-handed alpha
Helix 9
AA9
A
182 195Right-handed alpha
Helix 10
AB1
A
205 216Right-handed alpha
Helix 11
AB2
A
223 244Right-handed alpha
Helix 12
AB3
A
253 258Right-handed alpha
Helix 13
AB4
A
277 282Right-handed alpha
Helix 14
AB5
A
287 296Right-handed alpha
Helix 15
AB6
A
297 301Right-handed 310
Helix 16
AB7
A
306 310Right-handed 310
Helix 17
AB8
A
324 338Right-handed alpha
Helix 18
AB9
A
384 402Right-handed alpha
Helix 19
AC1
A
405 410Right-handed alpha
Helix 20
AC2
A
414 436Right-handed alpha
Helix 21
AC3
B
10 28Right-handed alpha
Helix 22
AC4
B
40 48Right-handed alpha
Helix 23
AC5
B
49 51Right-handed 310
Helix 24
AC6
B
74 81Right-handed alpha
Helix 25
AC7
B
83 87Right-handed 310
Helix 26
AC8
B
88 90Right-handed 310
Helix 27
AC9
B
102 108Right-handed alpha
Helix 28
AD1
B
110 128Right-handed alpha
Helix 29
AD2
B
143 161Right-handed alpha
Helix 30
AD3
B
182 195Right-handed alpha
Helix 31
AD4
B
205 215Right-handed alpha
Helix 32
AD5
B
223 239Right-handed alpha
Helix 33
AD6
B
239 244Right-handed alpha
Helix 34
AD7
B
251 260Right-handed alpha
Helix 35
AD8
B
280 284Right-handed 310
Helix 36
AD9
B
287 296Right-handed alpha
Helix 37
AE1
B
297 301Right-handed 310
Helix 38
AE2
B
306 310Right-handed 310
Helix 39
AE3
B
324 339Right-handed alpha
Helix 40
AE4
B
340 343Right-handed 310
Helix 41
AE5
B
384 400Right-handed alpha
Helix 42
AE6
B
405 410Right-handed alpha
Helix 43
AE7
B
415 438Right-handed alpha
Helix 44
AE8
P
338 351Right-handed alpha
Helix 45
AE9
P
351 372Right-handed alpha
Helix 46
AF1
P
373 379Right-handed 310
Helix 47
AF2
P
383 417Right-handed alpha
Helix 48
AF3
P
428 464Right-handed alpha
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There are 6 sheets in PDB entry 5KMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 204parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 356parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 171parallel
Strand 6
B
200 204parallel
Strand 7
B
267 273parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
Strand 11
B
246 248anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
60 63anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
422 423first strand
Strand 2
P
426 427anti-parallel
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