Analysis of interatomic Contacts of Structural Units in PDB entry:
5KMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KMK entry

There is 1 chain in PDB entry 5KMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 484HIS 798
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5KMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
485 491Right-handed alpha
Helix 2
AA2
A
506 508Right-handed 310
Helix 3
AA3
A
553 567Right-handed alpha
Helix 4
AA4
A
597 603Right-handed alpha
Helix 5
AA5
A
623 644Right-handed alpha
Helix 6
AA6
A
652 654Right-handed 310
Helix 7
AA7
A
671 676Right-handed alpha
Helix 8
AA8
A
677 680Right-handed 310
Helix 9
AA9
A
690 694Right-handed 310
Helix 10
AB1
A
695 701Right-handed alpha
Helix 11
AB2
A
705 722Right-handed alpha
Helix 12
AB3
A
732 742Right-handed alpha
Helix 13
AB4
A
753 764Right-handed alpha
Helix 14
AB5
A
773 786Right-handed alpha
Helix 15
AB6
A
788 794Right-handed alpha
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There are 3 sheets in PDB entry 5KMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 518first strand
Strand 2
A
522 530anti-parallel
Strand 3
A
538 546anti-parallel
Strand 4
A
586 590anti-parallel
Strand 5
A
575 579anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
656 658anti-parallel
Strand 3
A
664 666anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 684first strand
Strand 2
A
687 689anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il