Analysis of interatomic Contacts of Structural Units in PDB entry:
5KMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KMS entry

There are 4 chains in PDB entry 5KMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LYS 396
B	LYS 3	GLY 397
C	LYS 3	LYS 396
D	LYS 3	GLY 397

There are 56 helices in PDB entry 5KMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	45	47	Right-handed 310
Helix 3	AA3	A	48	54	Right-handed alpha
Helix 4	AA4	A	57	60	Right-handed 310
Helix 5	AA5	A	65	69	Right-handed alpha
Helix 6	AA6	A	118	123	Right-handed alpha
Helix 7	AA7	A	128	147	Right-handed alpha
Helix 8	AA8	A	152	155	Right-handed 310
Helix 9	AA9	A	164	185	Right-handed alpha
Helix 10	AB1	A	188	192	Right-handed 310
Helix 11	AB2	A	208	222	Right-handed alpha
Helix 12	AB3	A	265	271	Right-handed alpha
Helix 13	AB4	A	315	335	Right-handed alpha
Helix 14	AB5	A	369	396	Right-handed alpha
Helix 15	AB6	B	12	26	Right-handed alpha
Helix 16	AB7	B	45	47	Right-handed 310
Helix 17	AB8	B	48	54	Right-handed alpha
Helix 18	AB9	B	57	60	Right-handed 310
Helix 19	AC1	B	65	69	Right-handed alpha
Helix 20	AC2	B	118	123	Right-handed alpha
Helix 21	AC3	B	128	147	Right-handed alpha
Helix 22	AC4	B	152	155	Right-handed 310
Helix 23	AC5	B	164	185	Right-handed alpha
Helix 24	AC6	B	188	192	Right-handed 310
Helix 25	AC7	B	208	222	Right-handed alpha
Helix 26	AC8	B	265	271	Right-handed alpha
Helix 27	AC9	B	315	335	Right-handed alpha
Helix 28	AD1	B	369	396	Right-handed alpha
Helix 29	AD2	C	12	26	Right-handed alpha
Helix 30	AD3	C	45	47	Right-handed 310
Helix 31	AD4	C	48	54	Right-handed alpha
Helix 32	AD5	C	57	60	Right-handed 310
Helix 33	AD6	C	65	69	Right-handed alpha
Helix 34	AD7	C	118	123	Right-handed alpha
Helix 35	AD8	C	128	149	Right-handed alpha
Helix 36	AD9	C	152	155	Right-handed 310
Helix 37	AE1	C	164	185	Right-handed alpha
Helix 38	AE2	C	188	192	Right-handed 310
Helix 39	AE3	C	208	222	Right-handed alpha
Helix 40	AE4	C	265	271	Right-handed alpha
Helix 41	AE5	C	315	335	Right-handed alpha
Helix 42	AE6	C	369	396	Right-handed alpha
Helix 43	AE7	D	12	26	Right-handed alpha
Helix 44	AE8	D	45	47	Right-handed 310
Helix 45	AE9	D	48	54	Right-handed alpha
Helix 46	AF1	D	57	60	Right-handed 310
Helix 47	AF2	D	65	69	Right-handed alpha
Helix 48	AF3	D	118	123	Right-handed alpha
Helix 49	AF4	D	128	147	Right-handed alpha
Helix 50	AF5	D	152	155	Right-handed 310
Helix 51	AF6	D	164	185	Right-handed alpha
Helix 52	AF7	D	188	192	Right-handed 310
Helix 53	AF8	D	208	222	Right-handed alpha
Helix 54	AF9	D	265	271	Right-handed alpha
Helix 55	AG1	D	315	335	Right-handed alpha
Helix 56	AG2	D	369	396	Right-handed alpha

There are 32 sheets in PDB entry 5KMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	78	first strand
Strand 2	A	32	37	parallel
Strand 3	A	5	9	parallel
Strand 4	A	102	105	parallel
Strand 5	A	294	296	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	62	64	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	85	first strand
Strand 2	A	90	93	anti-parallel
Strand 3	A	97	99	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	262	264	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	228	first strand
Strand 2	A	193	198	parallel
Strand 3	A	157	161	parallel
Strand 4	A	255	258	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	236	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	247	252	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	301	302	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	358	362	anti-parallel
Strand 3	A	365	368	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	78	first strand
Strand 2	B	32	37	parallel
Strand 3	B	5	9	parallel
Strand 4	B	102	105	parallel
Strand 5	B	294	296	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	62	64	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	85	first strand
Strand 2	B	90	93	anti-parallel
Strand 3	B	97	99	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	262	264	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	228	first strand
Strand 2	B	193	198	parallel
Strand 3	B	157	161	parallel
Strand 4	B	255	258	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	236	first strand
Strand 2	B	239	244	anti-parallel
Strand 3	B	247	252	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	301	302	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	358	362	anti-parallel
Strand 3	B	365	368	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	78	first strand
Strand 2	C	32	37	parallel
Strand 3	C	5	9	parallel
Strand 4	C	102	105	parallel
Strand 5	C	294	296	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	62	64	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	85	first strand
Strand 2	C	90	93	anti-parallel
Strand 3	C	97	99	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	262	264	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	228	first strand
Strand 2	C	193	198	parallel
Strand 3	C	157	161	parallel
Strand 4	C	255	258	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	236	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	247	252	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	301	302	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	352	first strand
Strand 2	C	358	362	anti-parallel
Strand 3	C	365	368	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	78	first strand
Strand 2	D	32	37	parallel
Strand 3	D	5	9	parallel
Strand 4	D	102	105	parallel
Strand 5	D	294	296	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	62	64	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	85	first strand
Strand 2	D	90	93	anti-parallel
Strand 3	D	97	99	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	111	first strand
Strand 2	D	262	264	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	228	first strand
Strand 2	D	193	198	parallel
Strand 3	D	157	161	parallel
Strand 4	D	255	258	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	236	first strand
Strand 2	D	239	244	anti-parallel
Strand 3	D	247	252	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	301	302	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	352	first strand
Strand 2	D	358	362	anti-parallel
Strand 3	D	365	368	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KMS