Analysis of interatomic Contacts of Structural Units in PDB entry:
5KMX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KMX entry

There are 5 chains in PDB entry 5KMX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 44	GLU 255
B	ASP 47	THR 250
C	ARG 45	LEU 249
D	GLU 50	THR 250
U	UNK 1	UNK 14

There are 16 helices in PDB entry 5KMX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	55	Right-handed alpha
Helix 2	AA2	A	58	63	Right-handed 310
Helix 3	AA3	A	150	163	Right-handed alpha
Helix 4	AA4	A	241	251	Right-handed alpha
Helix 5	AA5	B	48	55	Right-handed alpha
Helix 6	AA6	B	57	63	Right-handed 310
Helix 7	AA7	B	149	163	Right-handed alpha
Helix 8	AA8	B	241	250	Right-handed alpha
Helix 9	AA9	C	46	52	Right-handed alpha
Helix 10	AB1	C	57	61	Right-handed alpha
Helix 11	AB2	C	149	163	Right-handed alpha
Helix 12	AB3	C	241	248	Right-handed alpha
Helix 13	AB4	D	56	61	Right-handed alpha
Helix 14	AB5	D	136	140	Right-handed 310
Helix 15	AB6	D	149	164	Right-handed alpha
Helix 16	AB7	D	241	248	Right-handed alpha

There are 22 sheets in PDB entry 5KMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	65	67	anti-parallel
Strand 3	A	106	113	anti-parallel
Strand 4	A	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	65	67	anti-parallel
Strand 3	A	106	113	anti-parallel
Strand 4	A	119	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	79	first strand
Strand 2	A	87	97	anti-parallel
Strand 3	A	231	238	anti-parallel
Strand 4	A	179	199	parallel
Strand 5	A	203	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	79	first strand
Strand 2	A	87	97	anti-parallel
Strand 3	A	231	238	anti-parallel
Strand 4	A	179	199	parallel
Strand 5	A	166	169	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	79	first strand
Strand 2	A	87	97	anti-parallel
Strand 3	A	231	238	anti-parallel
Strand 4	A	179	199	parallel
Strand 5	A	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	79	first strand
Strand 2	A	87	97	anti-parallel
Strand 3	A	231	238	anti-parallel
Strand 4	A	179	199	parallel
Strand 5	A	126	134	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	65	67	anti-parallel
Strand 3	B	106	113	anti-parallel
Strand 4	B	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	65	67	anti-parallel
Strand 3	B	106	113	anti-parallel
Strand 4	B	119	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	89	97	anti-parallel
Strand 3	B	231	238	anti-parallel
Strand 4	B	179	200	parallel
Strand 5	B	203	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	89	97	anti-parallel
Strand 3	B	231	238	anti-parallel
Strand 4	B	179	200	parallel
Strand 5	B	166	169	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	89	97	anti-parallel
Strand 3	B	231	238	anti-parallel
Strand 4	B	179	200	parallel
Strand 5	B	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	89	97	anti-parallel
Strand 3	B	231	238	anti-parallel
Strand 4	B	179	200	parallel
Strand 5	B	126	134	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	124	first strand
Strand 2	C	106	113	anti-parallel
Strand 3	C	102	103	anti-parallel
Strand 4	C	106	113	anti-parallel
Strand 5	C	65	67	anti-parallel
Strand 6	C	70	74	anti-parallel
Strand 7	C	92	97	anti-parallel
Strand 8	C	231	238	anti-parallel
Strand 9	C	179	198	parallel
Strand 10	C	126	134	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	106	113	anti-parallel
Strand 3	C	65	67	anti-parallel
Strand 4	C	70	74	anti-parallel
Strand 5	C	92	97	anti-parallel
Strand 6	C	231	238	anti-parallel
Strand 7	C	179	198	parallel
Strand 8	C	166	169	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	124	first strand
Strand 2	C	106	113	anti-parallel
Strand 3	C	65	67	anti-parallel
Strand 4	C	70	74	anti-parallel
Strand 5	C	92	97	anti-parallel
Strand 6	C	231	238	anti-parallel
Strand 7	C	179	198	parallel
Strand 8	C	204	206	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	124	first strand
Strand 2	C	106	113	anti-parallel
Strand 3	C	65	67	anti-parallel
Strand 4	C	70	74	anti-parallel
Strand 5	C	92	97	anti-parallel
Strand 6	C	231	238	anti-parallel
Strand 7	C	179	198	parallel
Strand 8	C	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	65	67	anti-parallel
Strand 3	D	106	113	anti-parallel
Strand 4	D	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	65	67	anti-parallel
Strand 3	D	106	113	anti-parallel
Strand 4	D	119	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	90	97	anti-parallel
Strand 3	D	231	238	anti-parallel
Strand 4	D	179	198	parallel
Strand 5	D	204	206	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	90	97	anti-parallel
Strand 3	D	231	238	anti-parallel
Strand 4	D	179	198	parallel
Strand 5	D	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	90	97	anti-parallel
Strand 3	D	231	238	anti-parallel
Strand 4	D	179	198	parallel
Strand 5	D	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	90	97	anti-parallel
Strand 3	D	231	238	anti-parallel
Strand 4	D	179	198	parallel
Strand 5	D	126	134	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KMX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KMX