Analysis of interatomic Contacts of Structural Units in PDB entry:
5KMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KMY entry

There is 1 chain in PDB entry 5KMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ILE 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5KMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
30 31Right-handed 310
Helix 3
AA3
A
32 43Right-handed alpha
Helix 4
AA4
A
61 74Right-handed alpha
Helix 5
AA5
A
77 90Right-handed alpha
Helix 6
AA6
A
102 110Right-handed alpha
Helix 7
AA7
A
110 122Right-handed alpha
Helix 8
AA8
A
132 135Right-handed 310
Helix 9
AA9
A
136 147Right-handed alpha
Helix 10
AB1
A
159 168Right-handed alpha
Helix 11
AB2
A
190 203Right-handed alpha
Helix 12
AB3
A
217 226Right-handed alpha
Helix 13
AB4
A
234 247Right-handed alpha
Helix 14
AB5
A
250 268Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5KMY.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
125 128parallel
Strand 3
A
97 101parallel
Strand 4
A
48 51parallel
Strand 5
A
19 25parallel
Strand 6
A
230 233parallel
Strand 7
A
209 211parallel
Strand 8
A
174 176parallel
Strand 9
A
153 154parallel
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