Analysis of interatomic Contacts of Structural Units in PDB entry:
5KN0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KN0 entry

There are 2 chains in PDB entry 5KN0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	GLU 348
B	GLY 3	TYR 298

There are 56 helices in PDB entry 5KN0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	30	Right-handed alpha
Helix 2	AA2	A	44	65	Right-handed alpha
Helix 3	AA3	A	80	88	Right-handed alpha
Helix 4	AA4	A	111	124	Right-handed alpha
Helix 5	AA5	A	132	141	Right-handed alpha
Helix 6	AA6	A	157	171	Right-handed alpha
Helix 7	AA7	A	181	188	Right-handed alpha
Helix 8	AA8	A	214	226	Right-handed alpha
Helix 9	AA9	A	234	236	Right-handed 310
Helix 10	AB1	A	237	244	Right-handed alpha
Helix 11	AB2	A	259	276	Right-handed alpha
Helix 12	AB3	A	288	292	Right-handed 310
Helix 13	AB4	A	295	304	Right-handed alpha
Helix 14	AB5	A	335	348	Right-handed alpha
Helix 15	AB6	B	22	30	Right-handed alpha
Helix 16	AB7	B	44	65	Right-handed alpha
Helix 17	AB8	B	80	88	Right-handed alpha
Helix 18	AB9	B	111	124	Right-handed alpha
Helix 19	AC1	B	132	142	Right-handed alpha
Helix 20	AC2	B	157	170	Right-handed alpha
Helix 21	AC3	B	181	188	Right-handed alpha
Helix 22	AC4	B	214	226	Right-handed alpha
Helix 23	AC5	B	234	236	Right-handed 310
Helix 24	AC6	B	237	244	Right-handed alpha
Helix 25	AC7	B	259	276	Right-handed alpha
Helix 26	AC8	B	288	292	Right-handed 310
Helix 27	AC9	B	295	304	Right-handed alpha
Helix 28	AD1	B	335	348	Right-handed alpha
Helix 29	AD2	C	22	30	Right-handed alpha
Helix 30	AD3	C	44	65	Right-handed alpha
Helix 31	AD4	C	80	88	Right-handed alpha
Helix 32	AD5	C	111	124	Right-handed alpha
Helix 33	AD6	C	132	142	Right-handed alpha
Helix 34	AD7	C	157	170	Right-handed alpha
Helix 35	AD8	C	181	188	Right-handed alpha
Helix 36	AD9	C	214	226	Right-handed alpha
Helix 37	AE1	C	234	236	Right-handed 310
Helix 38	AE2	C	237	244	Right-handed alpha
Helix 39	AE3	C	259	276	Right-handed alpha
Helix 40	AE4	C	288	292	Right-handed 310
Helix 41	AE5	C	295	304	Right-handed alpha
Helix 42	AE6	C	335	348	Right-handed alpha
Helix 43	AE7	D	22	30	Right-handed alpha
Helix 44	AE8	D	44	65	Right-handed alpha
Helix 45	AE9	D	80	88	Right-handed alpha
Helix 46	AF1	D	111	124	Right-handed alpha
Helix 47	AF2	D	132	141	Right-handed alpha
Helix 48	AF3	D	157	170	Right-handed alpha
Helix 49	AF4	D	181	189	Right-handed alpha
Helix 50	AF5	D	214	226	Right-handed alpha
Helix 51	AF6	D	234	236	Right-handed 310
Helix 52	AF7	D	237	244	Right-handed alpha
Helix 53	AF8	D	259	276	Right-handed alpha
Helix 54	AF9	D	288	294	Right-handed 310
Helix 55	AG1	D	295	304	Right-handed alpha
Helix 56	AG2	D	335	348	Right-handed alpha

There are 12 sheets in PDB entry 5KN0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	70	76	parallel
Strand 3	A	32	38	parallel
Strand 4	A	94	99	anti-parallel
Strand 5	A	103	105	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	176	179	parallel
Strand 3	A	147	151	parallel
Strand 4	A	195	198	anti-parallel
Strand 5	A	206	207	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	284	287	parallel
Strand 3	A	249	254	parallel
Strand 4	A	311	316	anti-parallel
Strand 5	A	322	324	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	70	76	parallel
Strand 3	B	32	38	parallel
Strand 4	B	94	99	anti-parallel
Strand 5	B	102	105	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	176	179	parallel
Strand 3	B	147	151	parallel
Strand 4	B	195	198	anti-parallel
Strand 5	B	206	207	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	284	287	parallel
Strand 3	B	249	254	parallel
Strand 4	B	311	316	anti-parallel
Strand 5	B	322	324	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	70	76	parallel
Strand 3	C	32	38	parallel
Strand 4	C	94	99	anti-parallel
Strand 5	C	102	105	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	176	179	parallel
Strand 3	C	147	151	parallel
Strand 4	C	195	198	anti-parallel
Strand 5	C	206	207	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	232	first strand
Strand 2	C	284	287	parallel
Strand 3	C	249	254	parallel
Strand 4	C	311	316	anti-parallel
Strand 5	C	322	324	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	70	76	parallel
Strand 3	D	32	38	parallel
Strand 4	D	94	99	anti-parallel
Strand 5	D	102	105	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	129	first strand
Strand 2	D	176	179	parallel
Strand 3	D	147	151	parallel
Strand 4	D	195	198	anti-parallel
Strand 5	D	206	207	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	232	first strand
Strand 2	D	284	287	parallel
Strand 3	D	249	254	parallel
Strand 4	D	311	316	anti-parallel
Strand 5	D	322	324	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KN0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KN0