Analysis of interatomic Contacts of Structural Units in PDB entry:
5KNE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KNE entry

There are 6 chains in PDB entry 5KNE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 165	VAL 857
B	GLN 6	VAL 857
C	GLN 6	VAL 857
D	GLN 6	VAL 857
E	GLU 165	VAL 857
F	GLU 165	VAL 857

There are212 helices in PDB entry 5KNE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	174	180	Right-handed alpha
Helix 2	AA2	A	189	201	Right-handed alpha
Helix 3	AA3	A	217	231	Right-handed alpha
Helix 4	AA4	A	261	275	Right-handed alpha
Helix 5	AA5	A	301	306	Right-handed alpha
Helix 6	AA6	A	317	329	Right-handed alpha
Helix 7	AA7	A	329	334	Right-handed alpha
Helix 8	AA8	A	344	354	Right-handed alpha
Helix 9	AA9	A	354	360	Right-handed alpha
Helix 10	AB1	A	368	383	Right-handed alpha
Helix 11	AB2	A	387	404	Right-handed alpha
Helix 12	AB3	A	404	409	Right-handed alpha
Helix 13	AB4	A	541	546	Right-handed alpha
Helix 14	AB5	A	546	552	Right-handed alpha
Helix 15	AB6	A	556	561	Right-handed alpha
Helix 16	AB7	A	565	580	Right-handed alpha
Helix 17	AB8	A	583	598	Right-handed alpha
Helix 18	AB9	A	619	631	Right-handed alpha
Helix 19	AC1	A	644	646	Right-handed 310
Helix 20	AC2	A	649	655	Right-handed alpha
Helix 21	AC3	A	670	678	Right-handed alpha
Helix 22	AC4	A	687	691	Right-handed 310
Helix 23	AC5	A	692	704	Right-handed alpha
Helix 24	AC6	A	730	739	Right-handed alpha
Helix 25	AC7	A	742	757	Right-handed alpha
Helix 26	AC8	A	759	766	Right-handed alpha
Helix 27	AC9	A	776	796	Right-handed alpha
Helix 28	AD1	A	807	817	Right-handed alpha
Helix 29	AD2	A	824	835	Right-handed alpha
Helix 30	AD3	A	836	846	Right-handed alpha
Helix 31	AD4	B	8	25	Right-handed alpha
Helix 32	AD5	B	34	39	Right-handed alpha
Helix 33	AD6	B	63	66	Right-handed 310
Helix 34	AD7	B	67	76	Right-handed alpha
Helix 35	AD8	B	89	99	Right-handed alpha
Helix 36	AD9	B	101	106	Right-handed alpha
Helix 37	AE1	B	112	120	Right-handed alpha
Helix 38	AE2	B	139	147	Right-handed alpha
Helix 39	AE3	B	174	180	Right-handed alpha
Helix 40	AE4	B	189	202	Right-handed alpha
Helix 41	AE5	B	218	220	Right-handed 310
Helix 42	AE6	B	221	231	Right-handed alpha
Helix 43	AE7	B	235	240	Right-handed alpha
Helix 44	AE8	B	260	262	Right-handed 310
Helix 45	AE9	B	263	273	Right-handed alpha
Helix 46	AF1	B	301	307	Right-handed alpha
Helix 47	AF2	B	317	325	Right-handed alpha
Helix 48	AF3	B	329	334	Right-handed alpha
Helix 49	AF4	B	344	363	Right-handed alpha
Helix 50	AF5	B	368	383	Right-handed alpha
Helix 51	AF6	B	387	408	Right-handed alpha
Helix 52	AF7	B	542	554	Right-handed alpha
Helix 53	AF8	B	556	563	Right-handed alpha
Helix 54	AF9	B	565	570	Right-handed alpha
Helix 55	AG1	B	571	577	Right-handed alpha
Helix 56	AG2	B	583	598	Right-handed alpha
Helix 57	AG3	B	599	601	Right-handed 310
Helix 58	AG4	B	619	633	Right-handed alpha
Helix 59	AG5	B	642	646	Right-handed 310
Helix 60	AG6	B	649	655	Right-handed alpha
Helix 61	AG7	B	669	678	Right-handed alpha
Helix 62	AG8	B	695	704	Right-handed alpha
Helix 63	AG9	B	730	739	Right-handed alpha
Helix 64	AH1	B	742	758	Right-handed alpha
Helix 65	AH2	B	759	766	Right-handed alpha
Helix 66	AH3	B	776	793	Right-handed alpha
Helix 67	AH4	B	807	819	Right-handed alpha
Helix 68	AH5	B	825	832	Right-handed alpha
Helix 69	AH6	B	836	847	Right-handed alpha
Helix 70	AH7	C	8	25	Right-handed alpha
Helix 71	AH8	C	34	40	Right-handed alpha
Helix 72	AH9	C	53	59	Right-handed alpha
Helix 73	AI1	C	61	75	Right-handed alpha
Helix 74	AI2	C	89	94	Right-handed alpha
Helix 75	AI3	C	94	99	Right-handed alpha
Helix 76	AI4	C	99	104	Right-handed alpha
Helix 77	AI5	C	112	121	Right-handed alpha
Helix 78	AI6	C	138	147	Right-handed alpha
Helix 79	AI7	C	173	180	Right-handed alpha
Helix 80	AI8	C	189	200	Right-handed alpha
Helix 81	AI9	C	217	231	Right-handed alpha
Helix 82	AJ1	C	235	240	Right-handed alpha
Helix 83	AJ2	C	261	275	Right-handed alpha
Helix 84	AJ3	C	301	307	Right-handed alpha
Helix 85	AJ4	C	317	329	Right-handed alpha
Helix 86	AJ5	C	329	335	Right-handed alpha
Helix 87	AJ6	C	344	363	Right-handed alpha
Helix 88	AJ7	C	368	383	Right-handed alpha
Helix 89	AJ8	C	390	409	Right-handed alpha
Helix 90	AJ9	C	411	434	Right-handed alpha
Helix 91	AK1	C	443	455	Right-handed alpha
Helix 92	AK2	C	458	467	Right-handed alpha
Helix 93	AK3	C	542	554	Right-handed alpha
Helix 94	AK4	C	556	562	Right-handed alpha
Helix 95	AK5	C	566	577	Right-handed alpha
Helix 96	AK6	C	583	597	Right-handed alpha
Helix 97	AK7	C	623	631	Right-handed alpha
Helix 98	AK8	C	669	678	Right-handed alpha
Helix 99	AK9	C	687	691	Right-handed 310
Helix 100	AL1	C	692	704	Right-handed alpha
Helix 101	AL2	C	730	737	Right-handed alpha
Helix 102	AL3	C	738	740	Right-handed 310
Helix 103	AL4	C	742	758	Right-handed alpha
Helix 104	AL5	C	759	766	Right-handed alpha
Helix 105	AL6	C	776	791	Right-handed alpha
Helix 106	AL7	C	792	794	Right-handed 310
Helix 107	AL8	C	807	817	Right-handed alpha
Helix 108	AL9	C	824	836	Right-handed alpha
Helix 109	AM1	C	836	847	Right-handed alpha
Helix 110	AM2	D	12	23	Right-handed alpha
Helix 111	AM3	D	32	40	Right-handed alpha
Helix 112	AM4	D	61	74	Right-handed alpha
Helix 113	AM5	D	89	100	Right-handed alpha
Helix 114	AM6	D	101	104	Right-handed 310
Helix 115	AM7	D	112	121	Right-handed alpha
Helix 116	AM8	D	137	147	Right-handed alpha
Helix 117	AM9	D	174	180	Right-handed alpha
Helix 118	AN1	D	189	200	Right-handed alpha
Helix 119	AN2	D	217	231	Right-handed alpha
Helix 120	AN3	D	235	241	Right-handed alpha
Helix 121	AN4	D	261	275	Right-handed alpha
Helix 122	AN5	D	301	307	Right-handed alpha
Helix 123	AN6	D	317	322	Right-handed alpha
Helix 124	AN7	D	323	329	Right-handed alpha
Helix 125	AN8	D	344	364	Right-handed alpha
Helix 126	AN9	D	368	383	Right-handed alpha
Helix 127	AO1	D	387	409	Right-handed alpha
Helix 128	AO2	D	411	433	Right-handed alpha
Helix 129	AO3	D	443	456	Right-handed alpha
Helix 130	AO4	D	458	465	Right-handed alpha
Helix 131	AO5	D	542	554	Right-handed alpha
Helix 132	AO6	D	556	563	Right-handed alpha
Helix 133	AO7	D	566	578	Right-handed alpha
Helix 134	AO8	D	583	597	Right-handed alpha
Helix 135	AO9	D	619	631	Right-handed alpha
Helix 136	AP1	D	642	646	Right-handed 310
Helix 137	AP2	D	649	655	Right-handed alpha
Helix 138	AP3	D	671	678	Right-handed alpha
Helix 139	AP4	D	687	691	Right-handed 310
Helix 140	AP5	D	692	704	Right-handed alpha
Helix 141	AP6	D	728	732	Right-handed 310
Helix 142	AP7	D	733	739	Right-handed alpha
Helix 143	AP8	D	742	758	Right-handed alpha
Helix 144	AP9	D	759	765	Right-handed alpha
Helix 145	AQ1	D	776	799	Right-handed alpha
Helix 146	AQ2	D	807	819	Right-handed alpha
Helix 147	AQ3	D	827	846	Right-handed alpha
Helix 148	AQ4	E	166	171	Right-handed alpha
Helix 149	AQ5	E	173	181	Right-handed alpha
Helix 150	AQ6	E	189	202	Right-handed alpha
Helix 151	AQ7	E	217	231	Right-handed alpha
Helix 152	AQ8	E	235	240	Right-handed alpha
Helix 153	AQ9	E	261	276	Right-handed alpha
Helix 154	AR1	E	301	307	Right-handed alpha
Helix 155	AR2	E	317	329	Right-handed alpha
Helix 156	AR3	E	329	334	Right-handed alpha
Helix 157	AR4	E	345	363	Right-handed alpha
Helix 158	AR5	E	368	383	Right-handed alpha
Helix 159	AR6	E	387	408	Right-handed alpha
Helix 160	AR7	E	411	434	Right-handed alpha
Helix 161	AR8	E	443	467	Right-handed alpha
Helix 162	AR9	E	541	552	Right-handed alpha
Helix 163	AS1	E	556	563	Right-handed alpha
Helix 164	AS2	E	566	580	Right-handed alpha
Helix 165	AS3	E	583	598	Right-handed alpha
Helix 166	AS4	E	619	631	Right-handed alpha
Helix 167	AS5	E	649	655	Right-handed alpha
Helix 168	AS6	E	670	676	Right-handed alpha
Helix 169	AS7	E	687	691	Right-handed 310
Helix 170	AS8	E	692	704	Right-handed alpha
Helix 171	AS9	E	728	733	Right-handed 310
Helix 172	AT1	E	734	739	Right-handed alpha
Helix 173	AT2	E	742	758	Right-handed alpha
Helix 174	AT3	E	759	765	Right-handed alpha
Helix 175	AT4	E	776	793	Right-handed alpha
Helix 176	AT5	E	794	799	Right-handed alpha
Helix 177	AT6	E	807	819	Right-handed alpha
Helix 178	AT7	E	825	833	Right-handed alpha
Helix 179	AT8	E	834	846	Right-handed alpha
Helix 180	AT9	F	166	171	Right-handed alpha
Helix 181	AU1	F	173	180	Right-handed alpha
Helix 182	AU2	F	189	202	Right-handed alpha
Helix 183	AU3	F	217	231	Right-handed alpha
Helix 184	AU4	F	235	240	Right-handed alpha
Helix 185	AU5	F	262	276	Right-handed alpha
Helix 186	AU6	F	317	322	Right-handed alpha
Helix 187	AU7	F	331	333	Right-handed 310
Helix 188	AU8	F	344	363	Right-handed alpha
Helix 189	AU9	F	368	383	Right-handed alpha
Helix 190	AV1	F	387	408	Right-handed alpha
Helix 191	AV2	F	411	426	Right-handed alpha
Helix 192	AV3	F	427	434	Right-handed alpha
Helix 193	AV4	F	443	450	Right-handed alpha
Helix 194	AV5	F	451	455	Right-handed 310
Helix 195	AV6	F	459	463	Right-handed 310
Helix 196	AV7	F	542	551	Right-handed alpha
Helix 197	AV8	F	556	563	Right-handed alpha
Helix 198	AV9	F	566	580	Right-handed alpha
Helix 199	AW1	F	583	598	Right-handed alpha
Helix 200	AW2	F	619	633	Right-handed alpha
Helix 201	AW3	F	649	654	Right-handed alpha
Helix 202	AW4	F	670	678	Right-handed alpha
Helix 203	AW5	F	687	691	Right-handed 310
Helix 204	AW6	F	692	704	Right-handed alpha
Helix 205	AW7	F	729	739	Right-handed alpha
Helix 206	AW8	F	743	758	Right-handed alpha
Helix 207	AW9	F	759	765	Right-handed alpha
Helix 208	AX1	F	776	782	Right-handed alpha
Helix 209	AX2	F	782	793	Right-handed alpha
Helix 210	AX3	F	807	819	Right-handed alpha
Helix 211	AX4	F	825	833	Right-handed alpha
Helix 212	AX5	F	836	847	Right-handed alpha

There are 21 sheets in PDB entry 5KNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	243	245	anti-parallel
Strand 3	A	280	282	parallel
Strand 4	A	312	313	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	211	first strand
Strand 2	A	335	339	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	642	first strand
Strand 2	A	682	686	parallel
Strand 3	A	722	726	parallel
Strand 4	A	609	613	parallel
Strand 5	A	768	771	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	715	717	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	243	246	anti-parallel
Strand 3	B	280	282	parallel
Strand 4	B	312	316	parallel
Strand 5	B	207	211	parallel
Strand 6	B	335	339	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	686	first strand
Strand 2	B	721	727	parallel
Strand 3	B	608	613	parallel
Strand 4	B	768	770	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	707	708	first strand
Strand 2	B	716	717	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	336	339	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	639	first strand
Strand 2	C	681	685	parallel
Strand 3	C	721	727	parallel
Strand 4	C	610	613	parallel
Strand 5	C	768	770	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	709	first strand
Strand 2	C	715	717	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	211	first strand
Strand 2	D	335	339	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	312	313	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	638	640	first strand
Strand 2	D	682	684	parallel
Strand 3	D	722	727	parallel
Strand 4	D	609	613	parallel
Strand 5	D	768	771	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	707	708	first strand
Strand 2	D	716	717	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	209	first strand
Strand 2	E	335	337	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	638	642	first strand
Strand 2	E	682	686	parallel
Strand 3	E	722	726	parallel
Strand 4	E	608	613	parallel
Strand 5	E	768	771	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	707	709	first strand
Strand 2	E	715	717	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	282	first strand
Strand 2	F	312	315	parallel
Strand 3	F	207	211	parallel
Strand 4	F	335	339	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	723	726	first strand
Strand 2	F	609	613	parallel
Strand 3	F	768	771	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	638	642	first strand
Strand 2	F	682	686	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	707	709	first strand
Strand 2	F	715	717	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KNE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KNE