Analysis of interatomic Contacts of Structural Units in PDB entry:
5KNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KNW entry

There is 1 chain in PDB entry 5KNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 437ALA 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5KNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
467 479Right-handed alpha
Helix 2
AA2
A
499 510Right-handed alpha
Helix 3
AA3
A
511 516Right-handed 310
Helix 4
AA4
A
525 543Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5KNW.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 486first strand
Strand 2
A
492 496anti-parallel
Strand 3
A
456 460anti-parallel
Strand 4
A
520 523anti-parallel
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