Analysis of interatomic Contacts of Structural Units in PDB entry:
5KO2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KO2 entry

There is 1 chain in PDB entry 5KO2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 28	PHE 728

There are100 helices in PDB entry 5KO2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	39	Right-handed alpha
Helix 2	AA2	A	43	83	Right-handed alpha
Helix 3	AA3	A	83	88	Right-handed alpha
Helix 4	AA4	A	95	154	Right-handed alpha
Helix 5	AA5	A	155	162	Right-handed alpha
Helix 6	AA6	A	163	171	Right-handed alpha
Helix 7	AA7	A	173	181	Right-handed alpha
Helix 8	AA8	A	183	207	Right-handed alpha
Helix 9	AA9	A	207	233	Right-handed alpha
Helix 10	AB1	A	233	256	Right-handed alpha
Helix 11	AB2	A	256	264	Right-handed alpha
Helix 12	AB3	A	267	276	Right-handed alpha
Helix 13	AB4	A	278	319	Right-handed alpha
Helix 14	AB5	A	323	367	Right-handed alpha
Helix 15	AB6	A	429	437	Right-handed alpha
Helix 16	AB7	A	455	457	Right-handed 310
Helix 17	AB8	A	458	465	Right-handed alpha
Helix 18	AB9	A	479	486	Right-handed alpha
Helix 19	AC1	A	492	503	Right-handed alpha
Helix 20	AC2	A	505	511	Right-handed alpha
Helix 21	AC3	A	528	544	Right-handed alpha
Helix 22	AC4	A	558	574	Right-handed alpha
Helix 23	AC5	A	584	589	Right-handed 310
Helix 24	AC6	A	607	615	Right-handed alpha
Helix 25	AC7	A	616	626	Right-handed alpha
Helix 26	AC8	A	692	699	Right-handed alpha
Helix 27	AC9	A	700	702	Right-handed 310
Helix 28	AD1	A	703	738	Right-handed alpha
Helix 29	AD2	A	743	795	Right-handed alpha
Helix 30	AD3	A	796	801	Right-handed alpha
Helix 31	AD4	A	806	816	Right-handed alpha
Helix 32	AD5	A	819	824	Right-handed 310
Helix 33	AD6	A	825	850	Right-handed alpha
Helix 34	AD7	A	850	886	Right-handed alpha
Helix 35	AD8	A	886	899	Right-handed alpha
Helix 36	AD9	A	899	907	Right-handed alpha
Helix 37	AE1	A	908	962	Right-handed alpha
Helix 38	AE2	A	966	989	Right-handed alpha
Helix 39	AE3	A	993	1010	Right-handed alpha
Helix 40	AE4	A	1071	1080	Right-handed alpha
Helix 41	AE5	A	1098	1100	Right-handed 310
Helix 42	AE6	A	1101	1108	Right-handed alpha
Helix 43	AE7	A	1123	1129	Right-handed alpha
Helix 44	AE8	A	1137	1148	Right-handed alpha
Helix 45	AE9	A	1150	1156	Right-handed alpha
Helix 46	AF1	A	1173	1189	Right-handed alpha
Helix 47	AF2	A	1203	1218	Right-handed alpha
Helix 48	AF3	A	1229	1234	Right-handed alpha
Helix 49	AF4	A	1252	1260	Right-handed alpha
Helix 50	AF5	A	1261	1270	Right-handed alpha
Helix 51	AF6	B	34	39	Right-handed alpha
Helix 52	AF7	B	43	83	Right-handed alpha
Helix 53	AF8	B	83	88	Right-handed alpha
Helix 54	AF9	B	95	154	Right-handed alpha
Helix 55	AG1	B	155	162	Right-handed alpha
Helix 56	AG2	B	163	171	Right-handed alpha
Helix 57	AG3	B	173	181	Right-handed alpha
Helix 58	AG4	B	183	207	Right-handed alpha
Helix 59	AG5	B	207	256	Right-handed alpha
Helix 60	AG6	B	256	264	Right-handed alpha
Helix 61	AG7	B	267	276	Right-handed alpha
Helix 62	AG8	B	277	319	Right-handed alpha
Helix 63	AG9	B	323	367	Right-handed alpha
Helix 64	AH1	B	428	437	Right-handed alpha
Helix 65	AH2	B	455	457	Right-handed 310
Helix 66	AH3	B	458	465	Right-handed alpha
Helix 67	AH4	B	479	486	Right-handed alpha
Helix 68	AH5	B	492	503	Right-handed alpha
Helix 69	AH6	B	505	511	Right-handed alpha
Helix 70	AH7	B	514	518	Right-handed 310
Helix 71	AH8	B	528	544	Right-handed alpha
Helix 72	AH9	B	558	574	Right-handed alpha
Helix 73	AI1	B	584	590	Right-handed alpha
Helix 74	AI2	B	607	615	Right-handed alpha
Helix 75	AI3	B	616	626	Right-handed alpha
Helix 76	AI4	B	692	699	Right-handed alpha
Helix 77	AI5	B	700	702	Right-handed 310
Helix 78	AI6	B	703	738	Right-handed alpha
Helix 79	AI7	B	743	795	Right-handed alpha
Helix 80	AI8	B	796	801	Right-handed alpha
Helix 81	AI9	B	806	816	Right-handed alpha
Helix 82	AJ1	B	819	824	Right-handed 310
Helix 83	AJ2	B	825	850	Right-handed alpha
Helix 84	AJ3	B	850	886	Right-handed alpha
Helix 85	AJ4	B	886	899	Right-handed alpha
Helix 86	AJ5	B	899	907	Right-handed alpha
Helix 87	AJ6	B	908	962	Right-handed alpha
Helix 88	AJ7	B	966	989	Right-handed alpha
Helix 89	AJ8	B	993	1010	Right-handed alpha
Helix 90	AJ9	B	1071	1080	Right-handed alpha
Helix 91	AK1	B	1098	1100	Right-handed 310
Helix 92	AK2	B	1101	1108	Right-handed alpha
Helix 93	AK3	B	1123	1129	Right-handed alpha
Helix 94	AK4	B	1137	1148	Right-handed alpha
Helix 95	AK5	B	1150	1156	Right-handed alpha
Helix 96	AK6	B	1173	1189	Right-handed alpha
Helix 97	AK7	B	1203	1218	Right-handed alpha
Helix 98	AK8	B	1229	1235	Right-handed alpha
Helix 99	AK9	B	1252	1259	Right-handed alpha
Helix 100	AL1	B	1261	1271	Right-handed alpha

There are 10 sheets in PDB entry 5KO2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	413	first strand
Strand 2	A	388	395	anti-parallel
Strand 3	A	444	449	anti-parallel
Strand 4	A	452	453	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	469	first strand
Strand 2	A	547	551	parallel
Strand 3	A	577	581	parallel
Strand 4	A	418	423	parallel
Strand 5	A	593	598	parallel
Strand 6	A	601	606	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1049	1056	first strand
Strand 2	A	1031	1038	anti-parallel
Strand 3	A	1087	1092	anti-parallel
Strand 4	A	1095	1096	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1109	1112	first strand
Strand 2	A	1192	1196	parallel
Strand 3	A	1222	1226	parallel
Strand 4	A	1061	1066	parallel
Strand 5	A	1238	1243	parallel
Strand 6	A	1246	1251	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1121	1122	first strand
Strand 2	A	1164	1165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	413	first strand
Strand 2	B	388	395	anti-parallel
Strand 3	B	444	449	anti-parallel
Strand 4	B	452	453	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	469	first strand
Strand 2	B	547	551	parallel
Strand 3	B	577	581	parallel
Strand 4	B	418	423	parallel
Strand 5	B	593	598	parallel
Strand 6	B	601	606	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1049	1056	first strand
Strand 2	B	1031	1038	anti-parallel
Strand 3	B	1087	1092	anti-parallel
Strand 4	B	1095	1096	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1110	1112	first strand
Strand 2	B	1192	1196	parallel
Strand 3	B	1222	1226	parallel
Strand 4	B	1061	1065	parallel
Strand 5	B	1238	1243	parallel
Strand 6	B	1246	1251	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1121	1122	first strand
Strand 2	B	1164	1165	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KO2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KO2