Analysis of interatomic Contacts of Structural Units in PDB entry:
5KOE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KOE entry

There are 3 chains in PDB entry 5KOE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 95	VAL 558
B	SER 94	VAL 558
C	ASN 91	LYS 390

There are 86 helices in PDB entry 5KOE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	108	111	Right-handed 310
Helix 2	AA2	A	112	117	Right-handed alpha
Helix 3	AA3	A	118	120	Right-handed 310
Helix 4	AA4	A	129	147	Right-handed alpha
Helix 5	AA5	A	150	158	Right-handed alpha
Helix 6	AA6	A	159	162	Right-handed 310
Helix 7	AA7	A	181	200	Right-handed alpha
Helix 8	AA8	A	210	215	Right-handed alpha
Helix 9	AA9	A	230	236	Right-handed 310
Helix 10	AB1	A	246	254	Right-handed alpha
Helix 11	AB2	A	276	281	Right-handed 310
Helix 12	AB3	A	282	291	Right-handed alpha
Helix 13	AB4	A	303	308	Right-handed alpha
Helix 14	AB5	A	312	321	Right-handed alpha
Helix 15	AB6	A	326	336	Right-handed alpha
Helix 16	AB7	A	339	354	Right-handed alpha
Helix 17	AB8	A	375	389	Right-handed alpha
Helix 18	AB9	A	420	433	Right-handed alpha
Helix 19	AC1	A	459	472	Right-handed alpha
Helix 20	AC2	A	482	493	Right-handed alpha
Helix 21	AC3	B	97	101	Right-handed 310
Helix 22	AC4	B	112	117	Right-handed alpha
Helix 23	AC5	B	118	120	Right-handed 310
Helix 24	AC6	B	129	147	Right-handed alpha
Helix 25	AC7	B	150	158	Right-handed alpha
Helix 26	AC8	B	159	162	Right-handed 310
Helix 27	AC9	B	181	200	Right-handed alpha
Helix 28	AD1	B	210	215	Right-handed alpha
Helix 29	AD2	B	232	239	Right-handed 310
Helix 30	AD3	B	246	253	Right-handed alpha
Helix 31	AD4	B	276	281	Right-handed 310
Helix 32	AD5	B	282	292	Right-handed alpha
Helix 33	AD6	B	303	308	Right-handed alpha
Helix 34	AD7	B	312	321	Right-handed alpha
Helix 35	AD8	B	323	325	Right-handed 310
Helix 36	AD9	B	326	336	Right-handed alpha
Helix 37	AE1	B	339	354	Right-handed alpha
Helix 38	AE2	B	375	389	Right-handed alpha
Helix 39	AE3	B	420	433	Right-handed alpha
Helix 40	AE4	B	460	472	Right-handed alpha
Helix 41	AE5	B	482	493	Right-handed alpha
Helix 42	AE6	C	93	101	Right-handed 310
Helix 43	AE7	C	111	117	Right-handed alpha
Helix 44	AE8	C	118	120	Right-handed 310
Helix 45	AE9	C	129	147	Right-handed alpha
Helix 46	AF1	C	150	158	Right-handed alpha
Helix 47	AF2	C	159	162	Right-handed 310
Helix 48	AF3	C	181	200	Right-handed alpha
Helix 49	AF4	C	210	215	Right-handed alpha
Helix 50	AF5	C	232	236	Right-handed 310
Helix 51	AF6	C	246	254	Right-handed alpha
Helix 52	AF7	C	276	281	Right-handed 310
Helix 53	AF8	C	282	290	Right-handed alpha
Helix 54	AF9	C	303	308	Right-handed alpha
Helix 55	AG1	C	312	321	Right-handed alpha
Helix 56	AG2	C	323	325	Right-handed 310
Helix 57	AG3	C	326	336	Right-handed alpha
Helix 58	AG4	C	339	354	Right-handed alpha
Helix 59	AG5	C	375	389	Right-handed alpha
Helix 60	AG6	C	420	433	Right-handed alpha
Helix 61	AG7	C	459	472	Right-handed alpha
Helix 62	AG8	C	482	493	Right-handed alpha
Helix 63	AG9	C	537	541	Right-handed 310
Helix 64	AH1	D	97	101	Right-handed 310
Helix 65	AH2	D	108	111	Right-handed 310
Helix 66	AH3	D	112	117	Right-handed alpha
Helix 67	AH4	D	118	120	Right-handed 310
Helix 68	AH5	D	129	147	Right-handed alpha
Helix 69	AH6	D	150	158	Right-handed alpha
Helix 70	AH7	D	159	162	Right-handed 310
Helix 71	AH8	D	181	200	Right-handed alpha
Helix 72	AH9	D	210	215	Right-handed alpha
Helix 73	AI1	D	232	236	Right-handed 310
Helix 74	AI2	D	246	253	Right-handed alpha
Helix 75	AI3	D	276	281	Right-handed 310
Helix 76	AI4	D	282	291	Right-handed alpha
Helix 77	AI5	D	303	308	Right-handed alpha
Helix 78	AI6	D	312	321	Right-handed alpha
Helix 79	AI7	D	323	325	Right-handed 310
Helix 80	AI8	D	326	336	Right-handed alpha
Helix 81	AI9	D	339	354	Right-handed alpha
Helix 82	AJ1	D	375	389	Right-handed alpha
Helix 83	AJ2	D	420	433	Right-handed alpha
Helix 84	AJ3	D	460	472	Right-handed alpha
Helix 85	AJ4	D	482	493	Right-handed alpha
Helix 86	AJ5	D	537	541	Right-handed 310

There are 16 sheets in PDB entry 5KOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	173	176	parallel
Strand 3	A	294	299	parallel
Strand 4	A	264	269	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	410	416	parallel
Strand 3	A	359	364	parallel
Strand 4	A	475	479	parallel
Strand 5	A	497	499	parallel
Strand 6	A	512	514	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	529	first strand
Strand 2	A	534	535	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	547	first strand
Strand 2	A	555	557	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	205	first strand
Strand 2	B	173	176	parallel
Strand 3	B	294	299	parallel
Strand 4	B	264	269	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	410	416	parallel
Strand 3	B	359	364	parallel
Strand 4	B	475	479	parallel
Strand 5	B	497	499	parallel
Strand 6	B	512	514	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	529	first strand
Strand 2	B	534	535	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	547	first strand
Strand 2	B	555	557	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	205	first strand
Strand 2	C	173	176	parallel
Strand 3	C	294	299	parallel
Strand 4	C	264	269	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	410	417	parallel
Strand 3	C	359	365	parallel
Strand 4	C	475	479	parallel
Strand 5	C	497	499	parallel
Strand 6	C	512	514	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	529	first strand
Strand 2	C	534	535	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	545	547	first strand
Strand 2	C	555	557	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	205	first strand
Strand 2	D	173	176	parallel
Strand 3	D	294	299	parallel
Strand 4	D	264	269	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	410	416	parallel
Strand 3	D	359	364	parallel
Strand 4	D	475	479	parallel
Strand 5	D	497	499	parallel
Strand 6	D	512	514	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	529	first strand
Strand 2	D	534	535	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	545	547	first strand
Strand 2	D	555	557	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KOE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KOE