Analysis of interatomic Contacts of Structural Units in PDB entry:
5KOH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KOH entry

There are 4 chains in PDB entry 5KOH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 6	LYS 496
B	PRO 2	ARG 511
C	ASP 6	LYS 496
D	PRO 2	ARG 511

There are101 helices in PDB entry 5KOH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	24	Right-handed alpha
Helix 2	AA2	A	26	35	Right-handed alpha
Helix 3	AA3	A	78	84	Right-handed alpha
Helix 4	AA4	A	102	108	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	143	158	Right-handed alpha
Helix 7	AA7	A	170	175	Right-handed alpha
Helix 8	AA8	A	178	191	Right-handed alpha
Helix 9	AA9	A	206	222	Right-handed alpha
Helix 10	AB1	A	246	248	Right-handed 310
Helix 11	AB2	A	249	262	Right-handed alpha
Helix 12	AB3	A	274	280	Right-handed alpha
Helix 13	AB4	A	281	284	Right-handed 310
Helix 14	AB5	A	291	307	Right-handed alpha
Helix 15	AB6	A	317	331	Right-handed alpha
Helix 16	AB7	A	333	363	Right-handed alpha
Helix 17	AB8	A	374	379	Right-handed alpha
Helix 18	AB9	A	379	386	Right-handed alpha
Helix 19	AC1	A	399	407	Right-handed alpha
Helix 20	AC2	A	421	433	Right-handed alpha
Helix 21	AC3	A	440	450	Right-handed alpha
Helix 22	AC4	A	459	463	Right-handed 310
Helix 23	AC5	A	467	484	Right-handed alpha
Helix 24	AC6	A	487	491	Right-handed 310
Helix 25	AC7	B	10	15	Right-handed alpha
Helix 26	AC8	B	17	30	Right-handed alpha
Helix 27	AC9	B	35	47	Right-handed alpha
Helix 28	AD1	B	48	57	Right-handed alpha
Helix 29	AD2	B	69	79	Right-handed alpha
Helix 30	AD3	B	91	107	Right-handed alpha
Helix 31	AD4	B	119	125	Right-handed alpha
Helix 32	AD5	B	126	142	Right-handed alpha
Helix 33	AD6	B	151	158	Right-handed alpha
Helix 34	AD7	B	160	171	Right-handed alpha
Helix 35	AD8	B	191	209	Right-handed alpha
Helix 36	AD9	B	228	244	Right-handed alpha
Helix 37	AE1	B	273	280	Right-handed alpha
Helix 38	AE2	B	290	293	Right-handed 310
Helix 39	AE3	B	294	303	Right-handed alpha
Helix 40	AE4	B	315	332	Right-handed alpha
Helix 41	AE5	B	336	358	Right-handed alpha
Helix 42	AE6	B	367	381	Right-handed alpha
Helix 43	AE7	B	394	407	Right-handed alpha
Helix 44	AE8	B	408	412	Right-handed 310
Helix 45	AE9	B	421	432	Right-handed alpha
Helix 46	AF1	B	440	442	Right-handed 310
Helix 47	AF2	B	443	451	Right-handed alpha
Helix 48	AF3	B	466	470	Right-handed 310
Helix 49	AF4	B	473	496	Right-handed alpha
Helix 50	AF5	B	503	507	Right-handed 310
Helix 51	AF6	C	9	24	Right-handed alpha
Helix 52	AF7	C	26	34	Right-handed alpha
Helix 53	AF8	C	78	84	Right-handed alpha
Helix 54	AF9	C	102	108	Right-handed alpha
Helix 55	AG1	C	135	142	Right-handed alpha
Helix 56	AG2	C	143	158	Right-handed alpha
Helix 57	AG3	C	170	175	Right-handed alpha
Helix 58	AG4	C	178	191	Right-handed alpha
Helix 59	AG5	C	206	222	Right-handed alpha
Helix 60	AG6	C	246	248	Right-handed 310
Helix 61	AG7	C	249	262	Right-handed alpha
Helix 62	AG8	C	274	280	Right-handed alpha
Helix 63	AG9	C	281	284	Right-handed 310
Helix 64	AH1	C	291	307	Right-handed alpha
Helix 65	AH2	C	316	331	Right-handed alpha
Helix 66	AH3	C	333	363	Right-handed alpha
Helix 67	AH4	C	374	379	Right-handed alpha
Helix 68	AH5	C	379	386	Right-handed alpha
Helix 69	AH6	C	399	407	Right-handed alpha
Helix 70	AH7	C	421	433	Right-handed alpha
Helix 71	AH8	C	440	450	Right-handed alpha
Helix 72	AH9	C	459	463	Right-handed 310
Helix 73	AI1	C	467	484	Right-handed alpha
Helix 74	AI2	C	487	491	Right-handed 310
Helix 75	AI3	D	10	15	Right-handed alpha
Helix 76	AI4	D	17	30	Right-handed alpha
Helix 77	AI5	D	35	47	Right-handed alpha
Helix 78	AI6	D	48	57	Right-handed alpha
Helix 79	AI7	D	69	79	Right-handed alpha
Helix 80	AI8	D	91	107	Right-handed alpha
Helix 81	AI9	D	119	125	Right-handed alpha
Helix 82	AJ1	D	126	142	Right-handed alpha
Helix 83	AJ2	D	151	158	Right-handed alpha
Helix 84	AJ3	D	160	171	Right-handed alpha
Helix 85	AJ4	D	191	209	Right-handed alpha
Helix 86	AJ5	D	228	244	Right-handed alpha
Helix 87	AJ6	D	273	280	Right-handed alpha
Helix 88	AJ7	D	290	293	Right-handed 310
Helix 89	AJ8	D	294	303	Right-handed alpha
Helix 90	AJ9	D	316	332	Right-handed alpha
Helix 91	AK1	D	336	354	Right-handed alpha
Helix 92	AK2	D	355	357	Right-handed 310
Helix 93	AK3	D	367	381	Right-handed alpha
Helix 94	AK4	D	394	407	Right-handed alpha
Helix 95	AK5	D	408	412	Right-handed 310
Helix 96	AK6	D	421	432	Right-handed alpha
Helix 97	AK7	D	440	442	Right-handed 310
Helix 98	AK8	D	443	451	Right-handed alpha
Helix 99	AK9	D	466	470	Right-handed 310
Helix 100	AL1	D	473	496	Right-handed alpha
Helix 101	AL2	D	503	507	Right-handed 310

There are 14 sheets in PDB entry 5KOH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	415	417	anti-parallel
Strand 3	A	389	393	parallel
Strand 4	A	366	369	parallel
Strand 5	A	436	439	parallel
Strand 6	A	454	456	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	58	59	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	163	168	parallel
Strand 3	A	94	99	parallel
Strand 4	A	130	131	parallel
Strand 5	B	62	63	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	238	244	parallel
Strand 3	A	286	289	parallel
Strand 4	A	310	312	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	84	89	parallel
Strand 3	B	145	150	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	249	first strand
Strand 2	B	216	222	parallel
Strand 3	B	283	288	parallel
Strand 4	B	307	310	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	418	first strand
Strand 2	B	384	390	parallel
Strand 3	B	361	365	parallel
Strand 4	B	436	439	parallel
Strand 5	B	454	456	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	415	417	anti-parallel
Strand 3	C	389	393	parallel
Strand 4	C	366	369	parallel
Strand 5	C	436	439	parallel
Strand 6	C	454	456	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	58	59	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	197	first strand
Strand 2	C	163	168	parallel
Strand 3	C	94	99	parallel
Strand 4	C	130	131	parallel
Strand 5	D	62	63	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	270	first strand
Strand 2	C	238	244	parallel
Strand 3	C	286	289	parallel
Strand 4	C	310	312	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	84	89	parallel
Strand 3	D	145	150	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	249	first strand
Strand 2	D	216	222	parallel
Strand 3	D	283	288	parallel
Strand 4	D	307	310	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	418	first strand
Strand 2	D	384	390	parallel
Strand 3	D	361	365	parallel
Strand 4	D	436	439	parallel
Strand 5	D	454	456	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KOH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KOH