Analysis of interatomic Contacts of Structural Units in PDB entry:
5KP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KP7 entry

There are 2 chains in PDB entry 5KP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2VAL 419
B
 MET 1LEU 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5KP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 27Right-handed alpha
Helix 2
AA2
A
31 37Right-handed alpha
Helix 3
AA3
A
50 66Right-handed alpha
Helix 4
AA4
A
67 73Right-handed alpha
Helix 5
AA5
A
91 100Right-handed alpha
Helix 6
AA6
A
112 114Right-handed 310
Helix 7
AA7
A
115 131Right-handed alpha
Helix 8
AA8
A
161 165Right-handed 310
Helix 9
AA9
A
212 235Right-handed alpha
Helix 10
AB1
A
253 270Right-handed alpha
Helix 11
AB2
A
272 284Right-handed alpha
Helix 12
AB3
A
284 295Right-handed alpha
Helix 13
AB4
A
297 299Right-handed 310
Helix 14
AB5
A
300 313Right-handed alpha
Helix 15
AB6
A
340 349Right-handed alpha
Helix 16
AB7
A
351 358Right-handed alpha
Helix 17
AB8
A
363 374Right-handed alpha
Helix 18
AB9
A
375 378Right-handed 310
Helix 19
AC1
A
391 399Right-handed alpha
Helix 20
AC2
B
2 18Right-handed alpha
Helix 21
AC3
B
19 22Right-handed 310
Helix 22
AC4
B
38 53Right-handed alpha
Helix 23
AC5
B
58 63Right-handed 310
Helix 24
AC6
B
67 79Right-handed alpha
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There are 4 sheets in PDB entry 5KP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
74 80parallel
Strand 3
A
137 144parallel
Strand 4
A
171 178anti-parallel
Strand 5
A
5 12anti-parallel
Strand 6
A
184 195anti-parallel
Strand 7
A
331 339anti-parallel
Strand 8
A
319 327anti-parallel
Strand 9
A
246 249parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
16 19anti-parallel
Strand 3
A
360 361parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
210 211anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
404 410anti-parallel
Strand 3
A
413 418anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il