Analysis of interatomic Contacts of Structural Units in PDB entry:
5KPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KPC entry

There are 2 chains in PDB entry 5KPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12LYS 356
B
 ASP 25LYS 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5KPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
24 44Right-handed alpha
Helix 3
AA3
A
47 63Right-handed alpha
Helix 4
AA4
A
82 90Right-handed alpha
Helix 5
AA5
A
107 123Right-handed alpha
Helix 6
AA6
A
139 149Right-handed alpha
Helix 7
AA7
A
160 175Right-handed alpha
Helix 8
AA8
A
185 189Right-handed 310
Helix 9
AA9
A
203 207Right-handed 310
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
248 255Right-handed alpha
Helix 12
AB3
A
264 271Right-handed 310
Helix 13
AB4
A
285 301Right-handed alpha
Helix 14
AB5
A
302 314Right-handed alpha
Helix 15
AB6
A
316 339Right-handed alpha
Helix 16
AB7
B
26 44Right-handed alpha
Helix 17
AB8
B
47 63Right-handed alpha
Helix 18
AB9
B
82 90Right-handed alpha
Helix 19
AC1
B
107 123Right-handed alpha
Helix 20
AC2
B
139 149Right-handed alpha
Helix 21
AC3
B
160 175Right-handed alpha
Helix 22
AC4
B
203 207Right-handed 310
Helix 23
AC5
B
209 219Right-handed alpha
Helix 24
AC6
B
248 254Right-handed alpha
Helix 25
AC7
B
264 271Right-handed 310
Helix 26
AC8
B
285 302Right-handed alpha
Helix 27
AC9
B
302 315Right-handed alpha
Helix 28
AD1
B
316 339Right-handed alpha
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There are 4 sheets in PDB entry 5KPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
153 158parallel
Strand 3
A
130 133parallel
Strand 4
A
195 201parallel
Strand 5
A
221 234parallel
Strand 6
A
346 355anti-parallel
Strand 7
A
275 283anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
261 262anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
154 158parallel
Strand 3
B
131 134parallel
Strand 4
B
195 200parallel
Strand 5
B
221 234parallel
Strand 6
B
346 355anti-parallel
Strand 7
B
275 283anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
B
261 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il