Analysis of interatomic Contacts of Structural Units in PDB entry:
5KPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KPI entry

There is 1 chain in PDB entry 5KPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 28PHE 728
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 5KPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
43 83Right-handed alpha
Helix 3
AA3
A
83 88Right-handed alpha
Helix 4
AA4
A
95 153Right-handed alpha
Helix 5
AA5
A
155 162Right-handed alpha
Helix 6
AA6
A
163 173Right-handed alpha
Helix 7
AA7
A
173 181Right-handed alpha
Helix 8
AA8
A
183 207Right-handed alpha
Helix 9
AA9
A
207 256Right-handed alpha
Helix 10
AB1
A
256 263Right-handed alpha
Helix 11
AB2
A
267 276Right-handed alpha
Helix 12
AB3
A
278 319Right-handed alpha
Helix 13
AB4
A
323 367Right-handed alpha
Helix 14
AB5
A
427 437Right-handed alpha
Helix 15
AB6
A
455 457Right-handed 310
Helix 16
AB7
A
458 465Right-handed alpha
Helix 17
AB8
A
479 486Right-handed alpha
Helix 18
AB9
A
492 503Right-handed alpha
Helix 19
AC1
A
505 511Right-handed alpha
Helix 20
AC2
A
528 544Right-handed alpha
Helix 21
AC3
A
558 573Right-handed alpha
Helix 22
AC4
A
584 590Right-handed alpha
Helix 23
AC5
A
607 615Right-handed alpha
Helix 24
AC6
A
616 623Right-handed alpha
Helix 25
AC7
A
692 700Right-handed alpha
Helix 26
AC8
A
703 738Right-handed alpha
Helix 27
AC9
A
742 795Right-handed alpha
Helix 28
AD1
A
796 801Right-handed alpha
Helix 29
AD2
A
806 816Right-handed alpha
Helix 30
AD3
A
819 824Right-handed 310
Helix 31
AD4
A
826 850Right-handed alpha
Helix 32
AD5
A
850 898Right-handed alpha
Helix 33
AD6
A
899 907Right-handed alpha
Helix 34
AD7
A
908 962Right-handed alpha
Helix 35
AD8
A
966 989Right-handed alpha
Helix 36
AD9
A
993 1010Right-handed alpha
Helix 37
AE1
A
1070 1080Right-handed alpha
Helix 38
AE2
A
1098 1100Right-handed 310
Helix 39
AE3
A
1101 1108Right-handed alpha
Helix 40
AE4
A
1122 1129Right-handed alpha
Helix 41
AE5
A
1137 1148Right-handed alpha
Helix 42
AE6
A
1150 1156Right-handed alpha
Helix 43
AE7
A
1173 1189Right-handed alpha
Helix 44
AE8
A
1203 1219Right-handed alpha
Helix 45
AE9
A
1229 1235Right-handed alpha
Helix 46
AF1
A
1252 1260Right-handed alpha
Helix 47
AF2
A
1261 1272Right-handed alpha
Helix 48
AF3
B
34 39Right-handed alpha
Helix 49
AF4
B
43 83Right-handed alpha
Helix 50
AF5
B
83 88Right-handed alpha
Helix 51
AF6
B
95 153Right-handed alpha
Helix 52
AF7
B
155 162Right-handed alpha
Helix 53
AF8
B
163 173Right-handed alpha
Helix 54
AF9
B
173 181Right-handed alpha
Helix 55
AG1
B
183 207Right-handed alpha
Helix 56
AG2
B
207 256Right-handed alpha
Helix 57
AG3
B
256 263Right-handed alpha
Helix 58
AG4
B
267 276Right-handed alpha
Helix 59
AG5
B
278 319Right-handed alpha
Helix 60
AG6
B
323 367Right-handed alpha
Helix 61
AG7
B
427 437Right-handed alpha
Helix 62
AG8
B
455 457Right-handed 310
Helix 63
AG9
B
458 465Right-handed alpha
Helix 64
AH1
B
479 486Right-handed alpha
Helix 65
AH2
B
492 503Right-handed alpha
Helix 66
AH3
B
505 511Right-handed alpha
Helix 67
AH4
B
528 544Right-handed alpha
Helix 68
AH5
B
558 573Right-handed alpha
Helix 69
AH6
B
584 590Right-handed alpha
Helix 70
AH7
B
607 615Right-handed alpha
Helix 71
AH8
B
616 626Right-handed alpha
Helix 72
AH9
B
692 700Right-handed alpha
Helix 73
AI1
B
703 738Right-handed alpha
Helix 74
AI2
B
743 795Right-handed alpha
Helix 75
AI3
B
796 802Right-handed alpha
Helix 76
AI4
B
806 816Right-handed alpha
Helix 77
AI5
B
819 824Right-handed 310
Helix 78
AI6
B
826 850Right-handed alpha
Helix 79
AI7
B
850 899Right-handed alpha
Helix 80
AI8
B
899 907Right-handed alpha
Helix 81
AI9
B
908 954Right-handed alpha
Helix 82
AJ1
B
954 962Right-handed alpha
Helix 83
AJ2
B
966 989Right-handed alpha
Helix 84
AJ3
B
993 1010Right-handed alpha
Helix 85
AJ4
B
1070 1080Right-handed alpha
Helix 86
AJ5
B
1098 1100Right-handed 310
Helix 87
AJ6
B
1101 1108Right-handed alpha
Helix 88
AJ7
B
1122 1129Right-handed alpha
Helix 89
AJ8
B
1137 1148Right-handed alpha
Helix 90
AJ9
B
1150 1156Right-handed alpha
Helix 91
AK1
B
1159 1163Right-handed 310
Helix 92
AK2
B
1173 1189Right-handed alpha
Helix 93
AK3
B
1203 1219Right-handed alpha
Helix 94
AK4
B
1229 1236Right-handed alpha
Helix 95
AK5
B
1252 1260Right-handed alpha
Helix 96
AK6
B
1261 1271Right-handed alpha
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There are 8 sheets in PDB entry 5KPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 413first strand
Strand 2
A
388 395anti-parallel
Strand 3
A
446 449anti-parallel
Strand 4
A
452 453anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
547 551parallel
Strand 3
A
577 581parallel
Strand 4
A
418 423parallel
Strand 5
A
593 598parallel
Strand 6
A
601 606anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1056first strand
Strand 2
A
1031 1038anti-parallel
Strand 3
A
1087 1092anti-parallel
Strand 4
A
1095 1096anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1109 1112first strand
Strand 2
A
1192 1196parallel
Strand 3
A
1222 1226parallel
Strand 4
A
1061 1065parallel
Strand 5
A
1238 1243parallel
Strand 6
A
1246 1251anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 413first strand
Strand 2
B
388 395anti-parallel
Strand 3
B
446 449anti-parallel
Strand 4
B
452 453anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 469first strand
Strand 2
B
547 551parallel
Strand 3
B
577 581parallel
Strand 4
B
418 423parallel
Strand 5
B
594 598parallel
Strand 6
B
601 606anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1049 1056first strand
Strand 2
B
1031 1038anti-parallel
Strand 3
B
1087 1092anti-parallel
Strand 4
B
1095 1096anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1109 1112first strand
Strand 2
B
1192 1196parallel
Strand 3
B
1222 1226parallel
Strand 4
B
1061 1066parallel
Strand 5
B
1238 1243parallel
Strand 6
B
1246 1251anti-parallel
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