Analysis of interatomic Contacts of Structural Units in PDB entry:
5KQ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KQ0 entry

There are 4 chains in PDB entry 5KQ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36ALA 110
A
 HIS 112ALA 748
B
 GLY 36ALA 110
B
 HIS 112LYS 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 85 helices in PDB entry 5KQ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 43Right-handed alpha
Helix 2
AA2
A
48 53Right-handed 310
Helix 3
AA3
A
67 74Right-handed alpha
Helix 4
AA4
A
76 88Right-handed alpha
Helix 5
AA5
A
97 101Right-handed 310
Helix 6
AA6
A
102 115Right-handed alpha
Helix 7
AA7
A
129 133Right-handed 310
Helix 8
AA8
A
135 143Right-handed 310
Helix 9
AA9
A
144 152Right-handed alpha
Helix 10
AB1
A
152 160Right-handed alpha
Helix 11
AB2
A
161 163Right-handed 310
Helix 12
AB3
A
164 180Right-handed alpha
Helix 13
AB4
A
243 247Right-handed 310
Helix 14
AB5
A
249 263Right-handed alpha
Helix 15
AB6
A
267 279Right-handed alpha
Helix 16
AB7
A
289 293Right-handed 310
Helix 17
AB8
A
296 300Right-handed 310
Helix 18
AB9
A
301 305Right-handed 310
Helix 19
AC1
A
317 321Right-handed 310
Helix 20
AC2
A
339 348Right-handed alpha
Helix 21
AC3
A
386 395Right-handed alpha
Helix 22
AC4
A
395 408Right-handed alpha
Helix 23
AC5
A
408 426Right-handed alpha
Helix 24
AC6
A
430 434Right-handed 310
Helix 25
AC7
A
444 448Right-handed 310
Helix 26
AC8
A
459 473Right-handed alpha
Helix 27
AC9
A
476 489Right-handed alpha
Helix 28
AD1
A
503 507Right-handed 310
Helix 29
AD2
A
509 516Right-handed 310
Helix 30
AD3
A
517 538Right-handed alpha
Helix 31
AD4
A
546 566Right-handed alpha
Helix 32
AD5
A
587 592Right-handed alpha
Helix 33
AD6
A
593 595Right-handed 310
Helix 34
AD7
A
600 603Right-handed 310
Helix 35
AD8
A
612 624Right-handed alpha
Helix 36
AD9
A
627 642Right-handed alpha
Helix 37
AE1
A
644 648Right-handed 310
Helix 38
AE2
A
662 669Right-handed alpha
Helix 39
AE3
A
701 705Right-handed alpha
Helix 40
AE4
A
706 708Right-handed 310
Helix 41
AE5
A
709 720Right-handed alpha
Helix 42
AE6
A
724 741Right-handed alpha
Helix 43
AE7
A
744 748Right-handed 310
Helix 44
AE8
B
38 43Right-handed alpha
Helix 45
AE9
B
48 53Right-handed 310
Helix 46
AF1
B
67 75Right-handed alpha
Helix 47
AF2
B
76 88Right-handed alpha
Helix 48
AF3
B
97 101Right-handed 310
Helix 49
AF4
B
102 115Right-handed alpha
Helix 50
AF5
B
129 133Right-handed 310
Helix 51
AF6
B
135 143Right-handed 310
Helix 52
AF7
B
144 152Right-handed alpha
Helix 53
AF8
B
152 160Right-handed alpha
Helix 54
AF9
B
161 163Right-handed 310
Helix 55
AG1
B
164 180Right-handed alpha
Helix 56
AG2
B
243 247Right-handed 310
Helix 57
AG3
B
249 263Right-handed alpha
Helix 58
AG4
B
267 279Right-handed alpha
Helix 59
AG5
B
289 293Right-handed 310
Helix 60
AG6
B
296 300Right-handed 310
Helix 61
AG7
B
301 305Right-handed 310
Helix 62
AG8
B
317 321Right-handed 310
Helix 63
AG9
B
339 348Right-handed alpha
Helix 64
AH1
B
386 395Right-handed alpha
Helix 65
AH2
B
395 408Right-handed alpha
Helix 66
AH3
B
408 426Right-handed alpha
Helix 67
AH4
B
430 434Right-handed 310
Helix 68
AH5
B
444 448Right-handed 310
Helix 69
AH6
B
459 473Right-handed alpha
Helix 70
AH7
B
476 489Right-handed alpha
Helix 71
AH8
B
503 507Right-handed 310
Helix 72
AH9
B
509 516Right-handed 310
Helix 73
AI1
B
517 538Right-handed alpha
Helix 74
AI2
B
546 566Right-handed alpha
Helix 75
AI3
B
587 592Right-handed alpha
Helix 76
AI4
B
593 595Right-handed 310
Helix 77
AI5
B
600 603Right-handed 310
Helix 78
AI6
B
612 624Right-handed alpha
Helix 79
AI7
B
627 642Right-handed alpha
Helix 80
AI8
B
644 648Right-handed 310
Helix 81
AI9
B
662 669Right-handed alpha
Helix 82
AJ1
B
701 705Right-handed alpha
Helix 83
AJ2
B
706 708Right-handed 310
Helix 84
AJ3
B
709 720Right-handed alpha
Helix 85
AJ4
B
724 741Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5KQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
224 225anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
360 363anti-parallel
Strand 3
A
384 385anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
380 381anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 599first strand
Strand 2
A
604 605anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 677first strand
Strand 2
A
684 689anti-parallel
Strand 3
A
695 700anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
224 225anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 354first strand
Strand 2
B
360 364anti-parallel
Strand 3
B
384 385anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 372first strand
Strand 2
B
380 381anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
598 599first strand
Strand 2
B
604 605anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
673 677first strand
Strand 2
B
684 689anti-parallel
Strand 3
B
695 700anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il