Analysis of interatomic Contacts of Structural Units in PDB entry:
5KQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KQD entry

There is 1 chain in PDB entry 5KQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ASN 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5KQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 57Right-handed alpha
Helix 2
AA2
A
90 92Right-handed 310
Helix 3
AA3
A
93 98Right-handed alpha
Helix 4
AA4
A
116 122Right-handed alpha
Helix 5
AA5
A
137 153Right-handed alpha
Helix 6
AA6
A
214 227Right-handed alpha
Helix 7
AA7
A
230 241Right-handed alpha
Helix 8
AA8
A
242 246Right-handed 310
Helix 9
AA9
A
250 255Right-handed alpha
Helix 10
AB1
A
272 276Right-handed 310
Helix 11
AB2
A
277 283Right-handed alpha
Helix 12
AB3
A
285 313Right-handed alpha
Helix 13
AB4
A
321 325Right-handed 310
Helix 14
AB5
A
327 342Right-handed alpha
Helix 15
AB6
A
356 364Right-handed alpha
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There are 3 sheets in PDB entry 5KQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
82 88anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
160 164anti-parallel
Strand 3
A
348 351anti-parallel
Strand 4
A
317 320parallel
Strand 5
A
185 190parallel
Strand 6
A
194 201anti-parallel
Strand 7
A
204 211anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
268 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il