Analysis of interatomic Contacts of Structural Units in PDB entry:
5KQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KQT entry

There is 1 chain in PDB entry 5KQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LEU 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5KQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
21 27Right-handed alpha
Helix 3
AA3
A
55 60Right-handed alpha
Helix 4
AA4
A
67 82Right-handed alpha
Helix 5
AA5
A
92 106Right-handed alpha
Helix 6
AA6
A
119 138Right-handed alpha
Helix 7
AA7
A
158 164Right-handed alpha
Helix 8
AA8
A
166 170Right-handed 310
Helix 9
AA9
A
187 191Right-handed 310
Helix 10
AB1
A
196 216Right-handed alpha
Helix 11
AB2
A
240 252Right-handed alpha
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
A
287 291Right-handed 310
Helix 14
AB5
A
304 318Right-handed alpha
Helix 15
AB6
A
329 346Right-handed alpha
Helix 16
AB7
A
347 368Right-handed alpha
Helix 17
AB8
A
398 401Right-handed 310
Helix 18
AB9
A
402 414Right-handed alpha
Helix 19
AC1
A
436 459Right-handed alpha
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There are 3 sheets in PDB entry 5KQT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
42 45anti-parallel
Strand 3
A
50 53anti-parallel
Strand 4
A
416 417parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
298 303anti-parallel
Strand 3
A
283 286anti-parallel
Strand 4
A
255 259parallel
Strand 5
A
220 225parallel
Strand 6
A
145 149parallel
Strand 7
A
180 183parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 379first strand
Strand 2
A
382 387anti-parallel
Strand 3
A
426 429anti-parallel
Strand 4
A
419 420anti-parallel
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