Analysis of interatomic Contacts of Structural Units in PDB entry:
5KQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KQV entry

There are 6 chains in PDB entry 5KQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ASN 21
B	HIS 5	GLU 21
C	VAL 2	ILE 217
D	ASP 1	CYS 214
E	PRO 4	VAL 605
F	HIS 1	ASN 215

There are 38 helices in PDB entry 5KQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	B	7	20	Right-handed alpha
Helix 3	AA3	C	28	32	Right-handed 310
Helix 4	AA4	C	62	65	Right-handed 310
Helix 5	AA5	C	156	158	Right-handed 310
Helix 6	AA6	C	200	203	Right-handed 310
Helix 7	AA7	D	79	83	Right-handed 310
Helix 8	AA8	D	121	127	Right-handed alpha
Helix 9	AA9	D	183	187	Right-handed alpha
Helix 10	AB1	E	17	24	Right-handed 310
Helix 11	AB2	E	42	48	Right-handed alpha
Helix 12	AB3	E	132	136	Right-handed 310
Helix 13	AB4	E	148	152	Right-handed 310
Helix 14	AB5	E	193	197	Right-handed 310
Helix 15	AB6	E	255	264	Right-handed alpha
Helix 16	AB7	E	323	329	Right-handed alpha
Helix 17	AB8	E	349	359	Right-handed alpha
Helix 18	AB9	E	435	447	Right-handed alpha
Helix 19	AC1	E	594	604	Right-handed alpha
Helix 20	AC2	F	17	24	Right-handed 310
Helix 21	AC3	F	42	48	Right-handed alpha
Helix 22	AC4	F	132	136	Right-handed 310
Helix 23	AC5	F	148	152	Right-handed 310
Helix 24	AC6	F	193	197	Right-handed 310
Helix 25	AC7	F	255	264	Right-handed alpha
Helix 26	AC8	F	323	329	Right-handed alpha
Helix 27	AC9	F	349	359	Right-handed alpha
Helix 28	AD1	F	435	447	Right-handed alpha
Helix 29	AD2	F	594	604	Right-handed alpha
Helix 30	AD3	I	2	7	Right-handed alpha
Helix 31	AD4	J	9	20	Right-handed alpha
Helix 32	AD5	P	28	32	Right-handed 310
Helix 33	AD6	P	62	65	Right-handed 310
Helix 34	AD7	P	156	158	Right-handed 310
Helix 35	AD8	P	200	203	Right-handed 310
Helix 36	AD9	Q	79	83	Right-handed 310
Helix 37	AE1	Q	121	127	Right-handed alpha
Helix 38	AE2	Q	183	187	Right-handed alpha

There are 46 sheets in PDB entry 5KQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	136	145	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	163	171	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	194	199	anti-parallel
Strand 3	C	204	209	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	44	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	145	149	anti-parallel
Strand 3	D	191	197	anti-parallel
Strand 4	D	205	210	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	14	first strand
Strand 2	E	26	38	parallel
Strand 3	E	56	57	parallel
Strand 4	E	81	82	parallel
Strand 5	E	111	112	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	14	first strand
Strand 2	E	26	38	parallel
Strand 3	E	61	66	parallel
Strand 4	E	91	96	parallel
Strand 5	E	116	120	parallel
Strand 6	E	144	146	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	173	first strand
Strand 2	E	178	179	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	184	first strand
Strand 2	E	187	188	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	231	233	first strand
Strand 2	E	236	238	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	248	first strand
Strand 2	E	252	254	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	280	first strand
Strand 2	E	283	285	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	294	first strand
Strand 2	E	301	303	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	321	first strand
Strand 2	E	335	342	parallel
Strand 3	E	363	364	parallel
Strand 4	E	387	388	parallel
Strand 5	E	420	421	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	321	first strand
Strand 2	E	335	342	parallel
Strand 3	E	368	371	parallel
Strand 4	E	398	403	parallel
Strand 5	E	425	429	parallel
Strand 6	E	456	457	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	471	473	first strand
Strand 2	E	581	583	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	475	480	first strand
Strand 2	E	485	489	anti-parallel
Strand 3	E	550	553	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	530	534	first strand
Strand 2	E	503	509	anti-parallel
Strand 3	E	561	568	anti-parallel
Strand 4	E	586	589	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	14	first strand
Strand 2	F	26	38	parallel
Strand 3	F	56	57	parallel
Strand 4	F	81	82	parallel
Strand 5	F	111	112	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	14	first strand
Strand 2	F	26	38	parallel
Strand 3	F	61	66	parallel
Strand 4	F	91	96	parallel
Strand 5	F	116	120	parallel
Strand 6	F	144	146	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	173	first strand
Strand 2	F	178	180	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	184	first strand
Strand 2	F	187	188	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	233	first strand
Strand 2	F	236	238	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	248	first strand
Strand 2	F	252	254	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	280	first strand
Strand 2	F	283	285	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	294	first strand
Strand 2	F	301	303	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	311	321	first strand
Strand 2	F	335	342	parallel
Strand 3	F	363	364	parallel
Strand 4	F	387	388	parallel
Strand 5	F	420	421	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	311	321	first strand
Strand 2	F	335	342	parallel
Strand 3	F	368	371	parallel
Strand 4	F	398	403	parallel
Strand 5	F	425	429	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	471	473	first strand
Strand 2	F	581	583	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	475	480	first strand
Strand 2	F	485	489	anti-parallel
Strand 3	F	550	553	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	530	534	first strand
Strand 2	F	503	509	anti-parallel
Strand 3	F	561	568	anti-parallel
Strand 4	F	586	589	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	6	first strand
Strand 2	P	18	25	anti-parallel
Strand 3	P	78	83	anti-parallel
Strand 4	P	68	73	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	107	111	parallel
Strand 3	P	91	98	anti-parallel
Strand 4	P	34	39	anti-parallel
Strand 5	P	45	51	anti-parallel
Strand 6	P	58	60	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	107	111	parallel
Strand 3	P	91	98	anti-parallel
Strand 4	P	102	103	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	120	124	first strand
Strand 2	P	136	145	anti-parallel
Strand 3	P	174	183	anti-parallel
Strand 4	P	163	171	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	151	154	first strand
Strand 2	P	194	199	anti-parallel
Strand 3	P	204	209	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	4	7	first strand
Strand 2	Q	19	25	anti-parallel
Strand 3	Q	70	75	anti-parallel
Strand 4	Q	62	67	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	13	first strand
Strand 2	Q	102	106	parallel
Strand 3	Q	85	90	anti-parallel
Strand 4	Q	33	38	anti-parallel
Strand 5	Q	44	49	anti-parallel
Strand 6	Q	53	54	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	13	first strand
Strand 2	Q	102	106	parallel
Strand 3	Q	85	90	anti-parallel
Strand 4	Q	97	98	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	114	118	first strand
Strand 2	Q	129	139	anti-parallel
Strand 3	Q	173	182	anti-parallel
Strand 4	Q	159	163	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	154	155	first strand
Strand 2	Q	145	149	anti-parallel
Strand 3	Q	191	197	anti-parallel
Strand 4	Q	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KQV