Analysis of interatomic Contacts of Structural Units in PDB entry:
5KQW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KQW entry

There are 4 chains in PDB entry 5KQW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	LEU 459
B	THR 2	LEU 459
C	ASP 3	LEU 459
D	ASP 3	LEU 459

There are 76 helices in PDB entry 5KQW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	21	28	Right-handed alpha
Helix 3	AA3	A	55	60	Right-handed alpha
Helix 4	AA4	A	67	82	Right-handed alpha
Helix 5	AA5	A	92	106	Right-handed alpha
Helix 6	AA6	A	119	138	Right-handed alpha
Helix 7	AA7	A	158	164	Right-handed alpha
Helix 8	AA8	A	166	170	Right-handed 310
Helix 9	AA9	A	187	191	Right-handed 310
Helix 10	AB1	A	196	216	Right-handed alpha
Helix 11	AB2	A	240	252	Right-handed alpha
Helix 12	AB3	A	272	278	Right-handed alpha
Helix 13	AB4	A	287	291	Right-handed 310
Helix 14	AB5	A	304	318	Right-handed alpha
Helix 15	AB6	A	329	346	Right-handed alpha
Helix 16	AB7	A	347	368	Right-handed alpha
Helix 17	AB8	A	398	401	Right-handed 310
Helix 18	AB9	A	402	414	Right-handed alpha
Helix 19	AC1	A	436	459	Right-handed alpha
Helix 20	AC2	B	3	15	Right-handed alpha
Helix 21	AC3	B	21	28	Right-handed alpha
Helix 22	AC4	B	55	60	Right-handed alpha
Helix 23	AC5	B	67	82	Right-handed alpha
Helix 24	AC6	B	92	106	Right-handed alpha
Helix 25	AC7	B	119	138	Right-handed alpha
Helix 26	AC8	B	158	164	Right-handed alpha
Helix 27	AC9	B	166	170	Right-handed 310
Helix 28	AD1	B	187	191	Right-handed 310
Helix 29	AD2	B	196	216	Right-handed alpha
Helix 30	AD3	B	240	252	Right-handed alpha
Helix 31	AD4	B	272	278	Right-handed alpha
Helix 32	AD5	B	287	291	Right-handed 310
Helix 33	AD6	B	304	318	Right-handed alpha
Helix 34	AD7	B	329	346	Right-handed alpha
Helix 35	AD8	B	347	368	Right-handed alpha
Helix 36	AD9	B	398	401	Right-handed 310
Helix 37	AE1	B	402	414	Right-handed alpha
Helix 38	AE2	B	436	459	Right-handed alpha
Helix 39	AE3	C	4	14	Right-handed alpha
Helix 40	AE4	C	21	28	Right-handed alpha
Helix 41	AE5	C	55	60	Right-handed alpha
Helix 42	AE6	C	67	82	Right-handed alpha
Helix 43	AE7	C	92	106	Right-handed alpha
Helix 44	AE8	C	119	138	Right-handed alpha
Helix 45	AE9	C	158	164	Right-handed alpha
Helix 46	AF1	C	166	170	Right-handed 310
Helix 47	AF2	C	187	191	Right-handed 310
Helix 48	AF3	C	196	216	Right-handed alpha
Helix 49	AF4	C	240	252	Right-handed alpha
Helix 50	AF5	C	272	278	Right-handed alpha
Helix 51	AF6	C	287	291	Right-handed 310
Helix 52	AF7	C	304	318	Right-handed alpha
Helix 53	AF8	C	329	346	Right-handed alpha
Helix 54	AF9	C	347	368	Right-handed alpha
Helix 55	AG1	C	398	401	Right-handed 310
Helix 56	AG2	C	402	414	Right-handed alpha
Helix 57	AG3	C	436	459	Right-handed alpha
Helix 58	AG4	D	4	15	Right-handed alpha
Helix 59	AG5	D	21	28	Right-handed alpha
Helix 60	AG6	D	55	60	Right-handed alpha
Helix 61	AG7	D	67	82	Right-handed alpha
Helix 62	AG8	D	92	106	Right-handed alpha
Helix 63	AG9	D	119	138	Right-handed alpha
Helix 64	AH1	D	158	164	Right-handed alpha
Helix 65	AH2	D	166	170	Right-handed 310
Helix 66	AH3	D	187	191	Right-handed 310
Helix 67	AH4	D	196	216	Right-handed alpha
Helix 68	AH5	D	240	252	Right-handed alpha
Helix 69	AH6	D	272	278	Right-handed alpha
Helix 70	AH7	D	287	291	Right-handed 310
Helix 71	AH8	D	304	318	Right-handed alpha
Helix 72	AH9	D	329	346	Right-handed alpha
Helix 73	AI1	D	347	368	Right-handed alpha
Helix 74	AI2	D	398	401	Right-handed 310
Helix 75	AI3	D	402	414	Right-handed alpha
Helix 76	AI4	D	436	459	Right-handed alpha

There are 12 sheets in PDB entry 5KQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	50	53	parallel
Strand 3	A	42	45	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	B	90	91	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	B	33	39	parallel
Strand 3	B	42	45	anti-parallel
Strand 4	B	50	53	anti-parallel
Strand 5	B	416	417	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	117	first strand
Strand 2	A	298	303	anti-parallel
Strand 3	A	283	286	anti-parallel
Strand 4	A	255	259	parallel
Strand 5	A	220	225	parallel
Strand 6	A	145	149	parallel
Strand 7	A	180	183	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	379	first strand
Strand 2	A	382	387	anti-parallel
Strand 3	A	426	429	anti-parallel
Strand 4	A	419	420	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	117	first strand
Strand 2	B	298	303	anti-parallel
Strand 3	B	283	286	anti-parallel
Strand 4	B	255	259	parallel
Strand 5	B	220	225	parallel
Strand 6	B	145	149	parallel
Strand 7	B	180	183	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	379	first strand
Strand 2	B	382	387	anti-parallel
Strand 3	B	426	429	anti-parallel
Strand 4	B	419	420	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	D	111	117	parallel
Strand 3	D	298	303	anti-parallel
Strand 4	D	283	286	anti-parallel
Strand 5	D	255	259	parallel
Strand 6	D	220	225	parallel
Strand 7	D	145	149	parallel
Strand 8	D	180	183	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	417	first strand
Strand 2	C	50	53	parallel
Strand 3	C	42	45	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	D	90	91	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	D	33	39	parallel
Strand 3	D	42	45	anti-parallel
Strand 4	D	50	53	anti-parallel
Strand 5	D	416	417	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	117	first strand
Strand 2	C	298	303	anti-parallel
Strand 3	C	283	286	anti-parallel
Strand 4	C	255	259	parallel
Strand 5	C	220	225	parallel
Strand 6	C	145	149	parallel
Strand 7	C	180	183	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	379	first strand
Strand 2	C	382	387	anti-parallel
Strand 3	C	426	429	anti-parallel
Strand 4	C	419	420	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	379	first strand
Strand 2	D	382	387	anti-parallel
Strand 3	D	426	429	anti-parallel
Strand 4	D	419	420	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KQW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KQW