Analysis of interatomic Contacts of Structural Units in PDB entry:
5KR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KR4 entry

There are 2 chains in PDB entry 5KR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 459
B
 SER 3LEU 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 5KR4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
21 28Right-handed alpha
Helix 3
AA3
A
55 60Right-handed alpha
Helix 4
AA4
A
67 82Right-handed alpha
Helix 5
AA5
A
92 106Right-handed alpha
Helix 6
AA6
A
119 138Right-handed alpha
Helix 7
AA7
A
158 164Right-handed alpha
Helix 8
AA8
A
166 170Right-handed 310
Helix 9
AA9
A
187 191Right-handed 310
Helix 10
AB1
A
196 216Right-handed alpha
Helix 11
AB2
A
240 253Right-handed alpha
Helix 12
AB3
A
272 278Right-handed alpha
Helix 13
AB4
A
287 291Right-handed 310
Helix 14
AB5
A
304 318Right-handed alpha
Helix 15
AB6
A
329 346Right-handed alpha
Helix 16
AB7
A
347 368Right-handed alpha
Helix 17
AB8
A
398 401Right-handed 310
Helix 18
AB9
A
402 414Right-handed alpha
Helix 19
AC1
A
436 459Right-handed alpha
Helix 20
AC2
B
4 15Right-handed alpha
Helix 21
AC3
B
21 28Right-handed alpha
Helix 22
AC4
B
55 60Right-handed alpha
Helix 23
AC5
B
67 82Right-handed alpha
Helix 24
AC6
B
92 106Right-handed alpha
Helix 25
AC7
B
119 138Right-handed alpha
Helix 26
AC8
B
158 164Right-handed alpha
Helix 27
AC9
B
166 170Right-handed 310
Helix 28
AD1
B
187 191Right-handed 310
Helix 29
AD2
B
196 216Right-handed alpha
Helix 30
AD3
B
240 253Right-handed alpha
Helix 31
AD4
B
272 278Right-handed alpha
Helix 32
AD5
B
287 291Right-handed 310
Helix 33
AD6
B
304 318Right-handed alpha
Helix 34
AD7
B
329 346Right-handed alpha
Helix 35
AD8
B
347 368Right-handed alpha
Helix 36
AD9
B
398 401Right-handed 310
Helix 37
AE1
B
402 414Right-handed alpha
Helix 38
AE2
B
436 459Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5KR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
B
111 117parallel
Strand 3
B
298 303anti-parallel
Strand 4
B
283 286anti-parallel
Strand 5
B
255 259parallel
Strand 6
B
220 225parallel
Strand 7
B
145 149parallel
Strand 8
B
180 183parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 417first strand
Strand 2
A
50 53parallel
Strand 3
A
42 45anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
B
90 91parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
B
33 39parallel
Strand 3
B
42 45anti-parallel
Strand 4
B
50 53anti-parallel
Strand 5
B
416 417parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
298 303anti-parallel
Strand 3
A
283 286anti-parallel
Strand 4
A
255 259parallel
Strand 5
A
220 225parallel
Strand 6
A
145 149parallel
Strand 7
A
180 183parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 379first strand
Strand 2
A
382 387anti-parallel
Strand 3
A
426 429anti-parallel
Strand 4
A
419 421anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 379first strand
Strand 2
B
382 387anti-parallel
Strand 3
B
426 429anti-parallel
Strand 4
B
419 420anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il