Analysis of interatomic Contacts of Structural Units in PDB entry:
5KS1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KS1 entry

There are 2 chains in PDB entry 5KS1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ARG 400
B
 GLY 0ALA 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5KS1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
38 50Right-handed alpha
Helix 3
AA3
A
58 73Right-handed alpha
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
103 105Right-handed 310
Helix 6
AA6
A
106 116Right-handed alpha
Helix 7
AA7
A
125 143Right-handed alpha
Helix 8
AA8
A
150 160Right-handed alpha
Helix 9
AA9
A
161 166Right-handed alpha
Helix 10
AB1
A
173 176Right-handed 310
Helix 11
AB2
A
194 199Right-handed 310
Helix 12
AB3
A
216 224Right-handed alpha
Helix 13
AB4
A
225 240Right-handed alpha
Helix 14
AB5
A
276 286Right-handed alpha
Helix 15
AB6
A
298 302Right-handed 310
Helix 16
AB7
A
315 328Right-handed alpha
Helix 17
AB8
A
328 348Right-handed alpha
Helix 18
AB9
A
354 370Right-handed alpha
Helix 19
AC1
A
378 399Right-handed alpha
Helix 20
AC2
B
11 24Right-handed alpha
Helix 21
AC3
B
38 50Right-handed alpha
Helix 22
AC4
B
58 73Right-handed alpha
Helix 23
AC5
B
81 90Right-handed alpha
Helix 24
AC6
B
103 105Right-handed 310
Helix 25
AC7
B
106 116Right-handed alpha
Helix 26
AC8
B
125 143Right-handed alpha
Helix 27
AC9
B
150 160Right-handed alpha
Helix 28
AD1
B
161 166Right-handed alpha
Helix 29
AD2
B
173 176Right-handed 310
Helix 30
AD3
B
194 201Right-handed 310
Helix 31
AD4
B
202 208Right-handed alpha
Helix 32
AD5
B
215 224Right-handed alpha
Helix 33
AD6
B
225 240Right-handed alpha
Helix 34
AD7
B
276 286Right-handed alpha
Helix 35
AD8
B
298 302Right-handed 310
Helix 36
AD9
B
315 328Right-handed alpha
Helix 37
AE1
B
328 348Right-handed alpha
Helix 38
AE2
B
354 370Right-handed alpha
Helix 39
AE3
B
378 401Right-handed alpha
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There are 3 sheets in PDB entry 5KS1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
53 56parallel
Strand 3
A
28 35parallel
Strand 4
A
2 7parallel
Strand 5
A
96 99parallel
Strand 6
A
119 122parallel
Strand 7
A
146 148parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
178 185parallel
Strand 3
A
256 262anti-parallel
Strand 4
A
267 271anti-parallel
Strand 5
B
267 271anti-parallel
Strand 6
B
256 262anti-parallel
Strand 7
B
178 185anti-parallel
Strand 8
B
246 250parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
53 56parallel
Strand 3
B
28 35parallel
Strand 4
B
2 7parallel
Strand 5
B
96 99parallel
Strand 6
B
119 122parallel
Strand 7
B
146 148parallel
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