Analysis of interatomic Contacts of Structural Units in PDB entry:
5KS7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KS7 entry

There are 2 chains in PDB entry 5KS7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 247ILE 369
B
 VAL 248ILE 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5KS7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
250 255Right-handed alpha
Helix 2
AA2
A
267 279Right-handed alpha
Helix 3
AA3
A
298 305Right-handed alpha
Helix 4
AA4
A
306 308Right-handed 310
Helix 5
AA5
A
310 315Right-handed 310
Helix 6
AA6
A
327 339Right-handed alpha
Helix 7
AA7
A
358 368Right-handed alpha
Helix 8
AA8
B
250 255Right-handed alpha
Helix 9
AA9
B
267 279Right-handed alpha
Helix 10
AB1
B
298 305Right-handed alpha
Helix 11
AB2
B
310 315Right-handed 310
Helix 12
AB3
B
327 339Right-handed alpha
Helix 13
AB4
B
358 368Right-handed alpha
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There are 4 sheets in PDB entry 5KS7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
282 286parallel
Strand 3
A
292 297anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
343 346parallel
Strand 3
A
352 356anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
282 286parallel
Strand 3
B
292 297anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 323first strand
Strand 2
B
342 346parallel
Strand 3
B
352 357anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il