Analysis of interatomic Contacts of Structural Units in PDB entry:
5KS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5KS8 entry

There are 6 chains in PDB entry 5KS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 471
B	MET 1	GLY 471
C	LYS 3	ASP 617
D	ALA 2	PRO 616
E	LYS 3	GLU 511
F	LYS 3	PRO 616

There are132 helices in PDB entry 5KS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	25	Right-handed alpha
Helix 2	AA2	A	34	38	Right-handed 310
Helix 3	AA3	A	39	45	Right-handed alpha
Helix 4	AA4	A	61	73	Right-handed alpha
Helix 5	AA5	A	87	98	Right-handed alpha
Helix 6	AA6	A	105	114	Right-handed alpha
Helix 7	AA7	A	114	125	Right-handed alpha
Helix 8	AA8	A	247	265	Right-handed alpha
Helix 9	AA9	A	295	304	Right-handed alpha
Helix 10	AB1	A	306	316	Right-handed alpha
Helix 11	AB2	A	323	327	Right-handed 310
Helix 12	AB3	A	343	346	Right-handed 310
Helix 13	AB4	A	394	409	Right-handed alpha
Helix 14	AB5	A	417	427	Right-handed alpha
Helix 15	AB6	A	427	433	Right-handed alpha
Helix 16	AB7	A	443	448	Right-handed 310
Helix 17	AB8	A	454	470	Right-handed alpha
Helix 18	AB9	B	10	25	Right-handed alpha
Helix 19	AC1	B	34	38	Right-handed 310
Helix 20	AC2	B	39	45	Right-handed alpha
Helix 21	AC3	B	61	73	Right-handed alpha
Helix 22	AC4	B	87	98	Right-handed alpha
Helix 23	AC5	B	105	114	Right-handed alpha
Helix 24	AC6	B	114	125	Right-handed alpha
Helix 25	AC7	B	247	265	Right-handed alpha
Helix 26	AC8	B	295	304	Right-handed alpha
Helix 27	AC9	B	306	316	Right-handed alpha
Helix 28	AD1	B	323	327	Right-handed 310
Helix 29	AD2	B	343	346	Right-handed 310
Helix 30	AD3	B	394	409	Right-handed alpha
Helix 31	AD4	B	417	427	Right-handed alpha
Helix 32	AD5	B	427	433	Right-handed alpha
Helix 33	AD6	B	443	448	Right-handed 310
Helix 34	AD7	B	454	470	Right-handed alpha
Helix 35	AD8	C	12	19	Right-handed alpha
Helix 36	AD9	C	31	38	Right-handed alpha
Helix 37	AE1	C	49	57	Right-handed alpha
Helix 38	AE2	C	61	73	Right-handed alpha
Helix 39	AE3	C	83	87	Right-handed 310
Helix 40	AE4	C	94	109	Right-handed alpha
Helix 41	AE5	C	121	124	Right-handed 310
Helix 42	AE6	C	125	135	Right-handed alpha
Helix 43	AE7	C	152	166	Right-handed alpha
Helix 44	AE8	C	181	196	Right-handed alpha
Helix 45	AE9	C	210	221	Right-handed alpha
Helix 46	AF1	C	230	234	Right-handed 310
Helix 47	AF2	C	241	248	Right-handed alpha
Helix 48	AF3	C	259	277	Right-handed alpha
Helix 49	AF4	C	278	281	Right-handed 310
Helix 50	AF5	C	288	293	Right-handed 310
Helix 51	AF6	C	299	311	Right-handed alpha
Helix 52	AF7	C	313	315	Right-handed 310
Helix 53	AF8	C	316	331	Right-handed alpha
Helix 54	AF9	C	339	355	Right-handed alpha
Helix 55	AG1	C	362	370	Right-handed alpha
Helix 56	AG2	C	381	390	Right-handed alpha
Helix 57	AG3	C	398	403	Right-handed 310
Helix 58	AG4	C	406	414	Right-handed alpha
Helix 59	AG5	C	420	430	Right-handed alpha
Helix 60	AG6	C	430	443	Right-handed alpha
Helix 61	AG7	C	453	463	Right-handed alpha
Helix 62	AG8	D	12	19	Right-handed alpha
Helix 63	AG9	D	31	38	Right-handed alpha
Helix 64	AH1	D	49	57	Right-handed alpha
Helix 65	AH2	D	61	73	Right-handed alpha
Helix 66	AH3	D	83	87	Right-handed 310
Helix 67	AH4	D	94	108	Right-handed alpha
Helix 68	AH5	D	121	124	Right-handed 310
Helix 69	AH6	D	125	135	Right-handed alpha
Helix 70	AH7	D	152	166	Right-handed alpha
Helix 71	AH8	D	181	196	Right-handed alpha
Helix 72	AH9	D	210	221	Right-handed alpha
Helix 73	AI1	D	230	234	Right-handed 310
Helix 74	AI2	D	241	250	Right-handed alpha
Helix 75	AI3	D	259	277	Right-handed alpha
Helix 76	AI4	D	278	281	Right-handed 310
Helix 77	AI5	D	290	295	Right-handed alpha
Helix 78	AI6	D	297	311	Right-handed alpha
Helix 79	AI7	D	313	315	Right-handed 310
Helix 80	AI8	D	316	331	Right-handed alpha
Helix 81	AI9	D	339	355	Right-handed alpha
Helix 82	AJ1	D	362	370	Right-handed alpha
Helix 83	AJ2	D	381	390	Right-handed alpha
Helix 84	AJ3	D	398	403	Right-handed 310
Helix 85	AJ4	D	406	414	Right-handed alpha
Helix 86	AJ5	D	420	430	Right-handed alpha
Helix 87	AJ6	D	430	443	Right-handed alpha
Helix 88	AJ7	D	459	464	Right-handed alpha
Helix 89	AJ8	E	12	19	Right-handed alpha
Helix 90	AJ9	E	31	38	Right-handed alpha
Helix 91	AK1	E	49	57	Right-handed alpha
Helix 92	AK2	E	61	73	Right-handed alpha
Helix 93	AK3	E	83	87	Right-handed 310
Helix 94	AK4	E	94	108	Right-handed alpha
Helix 95	AK5	E	121	124	Right-handed 310
Helix 96	AK6	E	125	135	Right-handed alpha
Helix 97	AK7	E	152	166	Right-handed alpha
Helix 98	AK8	E	181	196	Right-handed alpha
Helix 99	AK9	E	210	221	Right-handed alpha
Helix 100	AL1	E	230	234	Right-handed 310
Helix 101	AL2	E	259	277	Right-handed alpha
Helix 102	AL3	E	278	281	Right-handed 310
Helix 103	AL4	E	318	331	Right-handed alpha
Helix 104	AL5	E	339	354	Right-handed alpha
Helix 105	AL6	E	363	370	Right-handed alpha
Helix 106	AL7	E	381	390	Right-handed alpha
Helix 107	AL8	E	398	403	Right-handed 310
Helix 108	AL9	E	409	414	Right-handed alpha
Helix 109	AM1	E	420	430	Right-handed alpha
Helix 110	AM2	E	430	443	Right-handed alpha
Helix 111	AM3	F	12	19	Right-handed alpha
Helix 112	AM4	F	31	38	Right-handed alpha
Helix 113	AM5	F	49	57	Right-handed alpha
Helix 114	AM6	F	61	73	Right-handed alpha
Helix 115	AM7	F	83	87	Right-handed 310
Helix 116	AM8	F	94	109	Right-handed alpha
Helix 117	AM9	F	121	124	Right-handed 310
Helix 118	AN1	F	125	135	Right-handed alpha
Helix 119	AN2	F	152	166	Right-handed alpha
Helix 120	AN3	F	181	196	Right-handed alpha
Helix 121	AN4	F	210	221	Right-handed alpha
Helix 122	AN5	F	230	234	Right-handed 310
Helix 123	AN6	F	241	246	Right-handed alpha
Helix 124	AN7	F	259	277	Right-handed alpha
Helix 125	AN8	F	278	281	Right-handed 310
Helix 126	AN9	F	282	286	Right-handed 310
Helix 127	AO1	F	363	370	Right-handed alpha
Helix 128	AO2	F	381	386	Right-handed alpha
Helix 129	AO3	F	398	403	Right-handed 310
Helix 130	AO4	F	406	414	Right-handed alpha
Helix 131	AO5	F	420	430	Right-handed alpha
Helix 132	AO6	F	430	444	Right-handed alpha

There are 22 sheets in PDB entry 5KS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	27	32	parallel
Strand 3	A	4	7	parallel
Strand 4	A	76	78	parallel
Strand 5	A	100	101	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	206	214	anti-parallel
Strand 3	A	269	277	anti-parallel
Strand 4	A	283	289	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	206	214	anti-parallel
Strand 3	A	225	232	anti-parallel
Strand 4	A	235	241	anti-parallel
Strand 5	A	332	339	anti-parallel
Strand 6	A	384	392	anti-parallel
Strand 7	A	365	369	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	348	349	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	376	377	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	410	412	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	27	32	parallel
Strand 3	B	4	7	parallel
Strand 4	B	76	78	parallel
Strand 5	B	100	101	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	289	first strand
Strand 2	B	269	277	anti-parallel
Strand 3	B	206	214	anti-parallel
Strand 4	B	220	232	anti-parallel
Strand 5	B	235	241	anti-parallel
Strand 6	B	332	339	anti-parallel
Strand 7	B	384	392	anti-parallel
Strand 8	B	365	369	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	348	349	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	410	412	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	42	47	parallel
Strand 3	C	78	82	parallel
Strand 4	C	112	115	parallel
Strand 5	C	138	144	parallel
Strand 6	C	170	175	parallel
Strand 7	C	200	204	parallel
Strand 8	C	225	228	parallel
Strand 9	C	5	8	parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	507	first strand
Strand 2	D	498	501	anti-parallel
Strand 3	D	478	485	anti-parallel
Strand 4	D	470	475	anti-parallel
Strand 5	C	505	512	anti-parallel
Strand 6	C	498	501	anti-parallel
Strand 7	C	478	485	anti-parallel
Strand 8	C	470	475	anti-parallel
Strand 9	D	509	512	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	582	587	first strand
Strand 2	C	573	579	anti-parallel
Strand 3	C	555	560	anti-parallel
Strand 4	C	604	605	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	567	568	first strand
Strand 2	C	592	597	anti-parallel
Strand 3	C	612	616	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	42	47	parallel
Strand 3	D	78	82	parallel
Strand 4	D	112	115	parallel
Strand 5	D	138	144	parallel
Strand 6	D	170	175	parallel
Strand 7	D	200	204	parallel
Strand 8	D	225	228	parallel
Strand 9	D	5	8	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	582	587	first strand
Strand 2	D	573	579	anti-parallel
Strand 3	D	555	560	anti-parallel
Strand 4	D	604	605	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	567	568	first strand
Strand 2	D	592	597	anti-parallel
Strand 3	D	612	615	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	42	47	parallel
Strand 3	E	78	82	parallel
Strand 4	E	112	115	parallel
Strand 5	E	138	144	parallel
Strand 6	E	170	175	parallel
Strand 7	E	200	204	parallel
Strand 8	E	225	228	parallel
Strand 9	E	5	8	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	505	507	first strand
Strand 2	F	498	501	anti-parallel
Strand 3	F	478	484	anti-parallel
Strand 4	F	470	475	anti-parallel
Strand 5	E	505	511	anti-parallel
Strand 6	E	498	501	anti-parallel
Strand 7	E	478	485	anti-parallel
Strand 8	E	470	475	anti-parallel
Strand 9	F	509	512	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	42	47	parallel
Strand 3	F	78	82	parallel
Strand 4	F	112	115	parallel
Strand 5	F	138	144	parallel
Strand 6	F	170	175	parallel
Strand 7	F	200	204	parallel
Strand 8	F	225	228	parallel
Strand 9	F	5	8	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	582	587	first strand
Strand 2	F	573	579	anti-parallel
Strand 3	F	555	560	anti-parallel
Strand 4	F	604	605	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	567	568	first strand
Strand 2	F	592	597	anti-parallel
Strand 3	F	612	615	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5KS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5KS8