Analysis of interatomic Contacts of Structural Units in PDB entry:
5KSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KSD entry

There are 2 chains in PDB entry 5KSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 12ILE 844
B
 VAL 12LEU 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 70 helices in PDB entry 5KSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 27Right-handed alpha
Helix 2
AA2
A
35 46Right-handed alpha
Helix 3
AA3
A
56 60Right-handed 310
Helix 4
AA4
A
67 84Right-handed alpha
Helix 5
AA5
A
89 121Right-handed alpha
Helix 6
AA6
A
121 129Right-handed alpha
Helix 7
AA7
A
218 224Right-handed alpha
Helix 8
AA8
A
234 255Right-handed alpha
Helix 9
AA9
A
257 266Right-handed alpha
Helix 10
AB1
A
270 272Right-handed 310
Helix 11
AB2
A
273 285Right-handed alpha
Helix 12
AB3
A
287 308Right-handed alpha
Helix 13
AB4
A
315 323Right-handed alpha
Helix 14
AB5
A
342 346Right-handed 310
Helix 15
AB6
A
357 365Right-handed alpha
Helix 16
AB7
A
372 382Right-handed alpha
Helix 17
AB8
A
384 390Right-handed alpha
Helix 18
AB9
A
425 430Right-handed alpha
Helix 19
AC1
A
436 454Right-handed alpha
Helix 20
AC2
A
492 503Right-handed alpha
Helix 21
AC3
A
514 526Right-handed alpha
Helix 22
AC4
A
534 538Right-handed alpha
Helix 23
AC5
A
550 558Right-handed alpha
Helix 24
AC6
A
565 579Right-handed alpha
Helix 25
AC7
A
589 591Right-handed 310
Helix 26
AC8
A
592 599Right-handed alpha
Helix 27
AC9
A
609 616Right-handed alpha
Helix 28
AD1
A
624 668Right-handed alpha
Helix 29
AD2
A
672 687Right-handed alpha
Helix 30
AD3
A
688 693Right-handed 310
Helix 31
AD4
A
705 731Right-handed alpha
Helix 32
AD5
A
735 740Right-handed alpha
Helix 33
AD6
A
749 774Right-handed alpha
Helix 34
AD7
A
784 805Right-handed alpha
Helix 35
AD8
A
816 844Right-handed alpha
Helix 36
AD9
B
19 26Right-handed alpha
Helix 37
AE1
B
35 42Right-handed alpha
Helix 38
AE2
B
43 46Right-handed 310
Helix 39
AE3
B
58 65Right-handed alpha
Helix 40
AE4
B
67 84Right-handed alpha
Helix 41
AE5
B
88 129Right-handed alpha
Helix 42
AE6
B
214 217Right-handed 310
Helix 43
AE7
B
218 223Right-handed alpha
Helix 44
AE8
B
234 256Right-handed alpha
Helix 45
AE9
B
257 266Right-handed alpha
Helix 46
AF1
B
273 285Right-handed alpha
Helix 47
AF2
B
288 308Right-handed alpha
Helix 48
AF3
B
315 323Right-handed alpha
Helix 49
AF4
B
342 346Right-handed 310
Helix 50
AF5
B
357 365Right-handed alpha
Helix 51
AF6
B
372 382Right-handed alpha
Helix 52
AF7
B
384 389Right-handed alpha
Helix 53
AF8
B
425 431Right-handed alpha
Helix 54
AF9
B
437 454Right-handed alpha
Helix 55
AG1
B
490 503Right-handed alpha
Helix 56
AG2
B
514 526Right-handed alpha
Helix 57
AG3
B
534 538Right-handed alpha
Helix 58
AG4
B
550 558Right-handed alpha
Helix 59
AG5
B
565 579Right-handed alpha
Helix 60
AG6
B
592 599Right-handed alpha
Helix 61
AG7
B
609 616Right-handed alpha
Helix 62
AG8
B
624 668Right-handed alpha
Helix 63
AG9
B
672 687Right-handed alpha
Helix 64
AH1
B
705 732Right-handed alpha
Helix 65
AH2
B
735 742Right-handed alpha
Helix 66
AH3
B
749 774Right-handed alpha
Helix 67
AH4
B
777 782Right-handed alpha
Helix 68
AH5
B
784 805Right-handed alpha
Helix 69
AH6
B
807 811Right-handed 310
Helix 70
AH7
B
816 843Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5KSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 136first strand
Strand 2
A
139 144anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
166 170anti-parallel
Strand 4
A
195 196anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
174 177anti-parallel
Strand 3
A
201 202anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
618 620anti-parallel
Strand 3
A
601 604parallel
Strand 4
A
583 587parallel
Strand 5
A
325 329parallel
Strand 6
A
506 510parallel
Strand 7
A
560 562parallel
Strand 8
A
532 533parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
478 485anti-parallel
Strand 3
A
456 464anti-parallel
Strand 4
A
417 424anti-parallel
Strand 5
A
406 413anti-parallel
Strand 6
A
394 398anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 136first strand
Strand 2
B
139 144anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
207 213anti-parallel
Strand 3
B
165 168anti-parallel
Strand 4
B
195 196anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
174 177anti-parallel
Strand 3
B
201 203anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
618 620anti-parallel
Strand 3
B
601 604parallel
Strand 4
B
583 587parallel
Strand 5
B
325 329parallel
Strand 6
B
506 510parallel
Strand 7
B
560 562parallel
Strand 8
B
532 533parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
478 485anti-parallel
Strand 3
B
456 464anti-parallel
Strand 4
B
417 424anti-parallel
Strand 5
B
406 413anti-parallel
Strand 6
B
394 398anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il