Analysis of interatomic Contacts of Structural Units in PDB entry:
5KSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KSP entry

There are 2 chains in PDB entry 5KSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 417PRO 580
B
 ASN 417MET 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5KSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
430 439Right-handed alpha
Helix 2
AA2
A
442 447Right-handed alpha
Helix 3
AA3
A
483 488Right-handed alpha
Helix 4
AA4
A
503 515Right-handed alpha
Helix 5
AA5
A
541 549Right-handed alpha
Helix 6
AA6
A
567 578Right-handed alpha
Helix 7
AA7
B
430 439Right-handed alpha
Helix 8
AA8
B
483 488Right-handed alpha
Helix 9
AA9
B
503 515Right-handed alpha
Helix 10
AB1
B
541 549Right-handed alpha
Helix 11
AB2
B
567 578Right-handed alpha
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There are 2 sheets in PDB entry 5KSP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 464first strand
Strand 2
A
467 476anti-parallel
Strand 3
A
418 424parallel
Strand 4
A
491 497parallel
Strand 5
A
522 527parallel
Strand 6
A
555 556parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 464first strand
Strand 2
B
467 476anti-parallel
Strand 3
B
418 424parallel
Strand 4
B
491 497parallel
Strand 5
B
522 527parallel
Strand 6
B
555 556parallel
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