Analysis of interatomic Contacts of Structural Units in PDB entry:
5KSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5KSS entry

There are 2 chains in PDB entry 5KSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 255
B
 MET 1HIS 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5KSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
67 76Right-handed alpha
Helix 3
AA3
A
97 101Right-handed 310
Helix 4
AA4
A
104 116Right-handed alpha
Helix 5
AA5
A
137 155Right-handed alpha
Helix 6
AA6
A
219 226Right-handed alpha
Helix 7
AA7
A
243 253Right-handed alpha
Helix 8
AA8
B
13 26Right-handed alpha
Helix 9
AA9
B
67 76Right-handed alpha
Helix 10
AB1
B
97 101Right-handed 310
Helix 11
AB2
B
104 116Right-handed alpha
Helix 12
AB3
B
137 155Right-handed alpha
Helix 13
AB4
B
171 175Right-handed 310
Helix 14
AB5
B
219 226Right-handed alpha
Helix 15
AB6
B
243 257Right-handed alpha
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There are 3 sheets in PDB entry 5KSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
86 92parallel
Strand 3
A
120 126parallel
Strand 4
A
161 168parallel
Strand 5
A
228 235anti-parallel
Strand 6
A
177 180parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
61 64parallel
Strand 3
A
52 58anti-parallel
Strand 4
B
202 205anti-parallel
Strand 5
B
193 196anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
202 205anti-parallel
Strand 3
B
52 58anti-parallel
Strand 4
B
61 64anti-parallel
Strand 5
B
29 35parallel
Strand 6
B
2 6parallel
Strand 7
B
86 92parallel
Strand 8
B
120 126parallel
Strand 9
B
161 168parallel
Strand 10
B
229 235anti-parallel
Strand 11
B
178 180parallel
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